Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR122920 Cardamine hirsuta HOM05D003015 ORTHO05D014119 6.8e-52 207.2 118 100.0
AT2G29580 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 1.2e-27 126.7 92 91.3
AL4G24300 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 2.7e-24 115.5 92 87.0
Sp4g12310 Schrenkiella parvula HOM05D003015 ORTHO05D003733 1.9e-22 109.4 93 83.9
CARHR007070 Cardamine hirsuta HOM05D003015 ORTHO05D003733 4.8e-21 104.8 55 90.9
Thhalv10016591m.g Eutrema salsugineum HOM05D003015 ORTHO05D003733 1.1e-20 103.6 92 80.4
Sp1g06110 Schrenkiella parvula HOM05D003015 ORTHO05D003733 3.1e-20 102.1 55 89.1
BcaB03g13399 Brassica carinata HOM05D003015 ORTHO05D003733 6.9e-20 100.9 55 87.3
A08p35690 Brassica napus HOM05D002022 ORTHO05D002056 6.9e-20 100.9 55 87.3
C08p02980 Brassica napus HOM05D003015 ORTHO05D003733 6.9e-20 100.9 55 87.3
BolC8t47098H Brassica oleracea HOM05D003015 ORTHO05D003733 6.9e-20 100.9 55 87.3
BraA08t35476Z Brassica rapa HOM05D003015 ORTHO05D003733 6.9e-20 100.9 55 87.3
AL1G17510 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 2.6e-19 99.0 92 59.8
BcaC02g08076 Brassica carinata HOM05D003015 ORTHO05D003733 2.6e-19 99.0 94 75.5
C04p58700 Brassica napus HOM05D003015 ORTHO05D003733 2.6e-19 99.0 94 75.5
BolC4t27389H Brassica oleracea HOM05D003015 ORTHO05D003733 9.9e-19 97.1 94 77.7
AT1G07360 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 4.9e-18 94.7 92 72.8
Aa31LG1G6670 Aethionema arabicum HOM05D003015 ORTHO05D003733 1.1e-17 93.6 58 79.3
CARHR204790 Cardamine hirsuta HOM05D003015 ORTHO05D003733 1.1e-17 93.6 96 55.2
THA.LOC104826299 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 2.4e-17 92.4 103 66.0
THA.LOC104800716 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 1.6e-16 89.7 104 66.3
Carub.0001s0666 Capsella rubella HOM05D003015 ORTHO05D003733 2.1e-16 89.4 92 75.0
Prupe.2G214800 Prunus persica HOM05D003015 ORTHO05D003733 3.5e-16 88.6 102 50.0
Prupe.8G143100 Prunus persica HOM05D003015 ORTHO05D003733 3.5e-16 88.6 102 50.0
Haze_24240 Corylus avellana HOM05D003015 ORTHO05D003733 1.0e-15 87.0 97 49.5
Phvul.L002537 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 1.0e-15 87.0 103 50.5
Cfa011635 Carpinus fangiana HOM05D003015 ORTHO05D003733 1.8e-15 86.3 97 49.5
TAR636G2105 Trochodendron aralioides HOM05D003015 ORTHO05D003733 3.0e-15 85.5 101 49.5
QL01p027360 Quercus lobata HOM05D003015 ORTHO05D003733 3.9e-15 85.1 100 49.0
Ah.04g164350 Amaranthus hybridus HOM05D003015 ORTHO05D003733 6.7e-15 84.3 102 48.0
Lalb_Chr02g0153531 Lupinus albus HOM05D003015 ORTHO05D003733 6.7e-15 84.3 103 49.5
Eucgr.J01948 Eucalyptus grandis HOM05D003015 ORTHO05D003733 8.7e-15 84.0 108 47.2
CSS0018492 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 1.1e-14 83.6 101 47.5
CSS0039767 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 1.1e-14 83.6 101 47.5
Lj6g0027942 Lotus japonicus HOM05D003015 ORTHO05D003733 1.5e-14 83.2 95 51.6
CiPaw.05G153000 Carya illinoinensis HOM05D003015 ORTHO05D003733 1.9e-14 82.8 100 47.0
Dinv14472 Davidia involucrata HOM05D003015 ORTHO05D003733 1.9e-14 82.8 109 60.6
FvH4_4g36530 Fragaria vesca HOM05D003015 ORTHO05D003733 1.9e-14 82.8 96 50.0
RcHm_v2.0_Chr4g0408701 Rosa chinensis HOM05D003015 ORTHO05D003733 1.9e-14 82.8 96 51.0
Actinidia38840 Actinidia chinensis HOM05D003015 ORTHO05D003733 2.5e-14 82.4 108 59.3
Glyma.02G303600 Glycine max HOM05D003015 ORTHO05D003733 3.3e-14 82.0 58 72.4
Glyma.13G076300 Glycine max HOM05D003015 ORTHO05D003733 3.3e-14 82.0 58 72.4
Glyma.14G010200 Glycine max HOM05D003015 ORTHO05D003733 3.3e-14 82.0 58 72.4
Glyma.20G050200 Glycine max HOM05D003015 ORTHO05D003733 3.3e-14 82.0 58 72.4
Gohir.D03G029400 Gossypium hirsutum HOM05D003015 ORTHO05D003733 3.3e-14 82.0 110 44.5
Gorai.003G031000 Gossypium raimondii HOM05D003015 ORTHO05D003733 3.3e-14 82.0 110 44.5
Lalb_Chr06g0171271 Lupinus albus HOM05D003015 ORTHO05D003733 3.3e-14 82.0 95 50.5
MD07G1175800 Malus domestica HOM05D003015 ORTHO05D003733 3.3e-14 82.0 94 51.1
Phvul.008G282900 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 3.3e-14 82.0 58 72.4
TPR.G14378 Trifolium pratense HOM05D003015 ORTHO05D003733 3.3e-14 82.0 58 72.4
VMungo0647G0404 Vigna mungo HOM05D003015 ORTHO05D003733 3.3e-14 82.0 58 72.4
EL10Ac4g08321 Beta vulgaris HOM05D003015 ORTHO05D003733 4.3e-14 81.6 102 46.1
FAN22G2074 Fragaria x ananassa HOM05D003015 ORTHO05D003733 4.3e-14 81.6 96 50.0
Hund12125 Selenicereus undatus HOM05D003015 ORTHO05D003733 4.3e-14 81.6 58 70.7
CANSAT35G0599 Cannabis sativa HOM05D003015 ORTHO05D003733 5.6e-14 81.3 96 51.0
Ca_16230_v3 Cicer arietinum L. HOM05D003015 ORTHO05D003733 5.6e-14 81.3 58 72.4
FAN12G3049 Fragaria x ananassa HOM05D003015 ORTHO05D003733 5.6e-14 81.3 96 49.0
Lalb_Chr21g0314561 Lupinus albus HOM05D003015 ORTHO05D003733 5.6e-14 81.3 58 72.4
arahy.Tifrunner.gnm1.ann1.42246I Arachis hypogaea HOM05D003015 ORTHO05D003733 7.4e-14 80.9 58 70.7
COL.COLO4_32624 Corchorus olitorius HOM05D003015 ORTHO05D003733 7.4e-14 80.9 91 48.4
Os07g0281000 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 7.4e-14 80.9 55 65.5
Potri.009G041400 Populus trichocarpa HOM05D003015 ORTHO05D003733 7.4e-14 80.9 100 46.0
Potri.009G041600 Populus trichocarpa HOM05D003015 ORTHO05D003733 7.4e-14 80.9 100 46.0
Rhsim13G0073800 Rhododendron simsii HOM05D003015 ORTHO05D003733 7.4e-14 80.9 59 71.2
Cc02_g23110 Coffea canephora HOM05D003015 ORTHO05D003733 9.6e-14 80.5 109 45.9
Nitab4.5_0000244g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 9.6e-14 80.5 101 46.5
CiPaw.14G062400 Carya illinoinensis HOM05D003015 ORTHO05D003733 1.3e-13 80.1 58 65.5
Duzib147G1171 Durio zibethinus HOM05D003015 ORTHO05D003733 1.3e-13 80.1 102 45.1
Nitab4.5_0012695g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 1.3e-13 80.1 101 46.5
Hma1.2p1_0227F.1_g096180 Hydrangea macrophylla HOM05D003015 ORTHO05D003733 1.6e-13 79.7 58 69.0
Os06g0170500 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 1.6e-13 79.7 55 65.5
EL10Ac3g06500 Beta vulgaris HOM05D003015 ORTHO05D003733 2.1e-13 79.3 110 45.5
Gohir.A02G151000 Gossypium hirsutum HOM05D003015 ORTHO05D003733 2.1e-13 79.3 102 45.1
Medtr3g079200 Medicago truncatula HOM05D003015 ORTHO05D003733 2.1e-13 79.3 58 70.7
Zm00001eb375430 Zea mays HOM05D003015 ORTHO05D003733 2.1e-13 79.3 55 65.5
Duzib168G1740 Durio zibethinus HOM05D003015 ORTHO05D003733 2.8e-13 79.0 58 65.5
Duzib264G0696 Durio zibethinus HOM05D003015 ORTHO05D003733 2.8e-13 79.0 102 44.1
FAN17G0963 Fragaria x ananassa HOM05D003015 ORTHO05D003733 2.8e-13 79.0 57 71.9
FAN22G0757 Fragaria x ananassa HOM05D003015 ORTHO05D003733 2.8e-13 79.0 57 71.9
Oeu045924.1 Olea europaea HOM05D003015 ORTHO05D003733 2.8e-13 79.0 101 46.5
SGA_v2.0_scaffold42G15905 Striga asiatica HOM05D003015 ORTHO05D003733 2.8e-13 79.0 113 45.1
TAR402G0004 Trochodendron aralioides HOM05D003015 ORTHO05D003733 2.8e-13 79.0 101 47.5
VMungo0540G1143 Vigna mungo HOM05D003015 ORTHO05D003733 2.8e-13 79.0 103 46.6
BolC9t59952H Brassica oleracea HOM05D003015 ORTHO05D003733 3.7e-13 78.6 108 43.5
Nitab4.5_0001618g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 3.7e-13 78.6 109 48.6
Nitab4.5_0005031g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 3.7e-13 78.6 109 48.6
Oeu049810.1 Olea europaea HOM05D003015 ORTHO05D003733 3.7e-13 78.6 101 46.5
Psat5g112760 Pisum sativum HOM05D003015 ORTHO05D003733 3.7e-13 78.6 57 71.9
MSTRG.5211 Avicennia marina HOM05D003015 ORTHO05D003733 4.8e-13 78.2 109 45.0
FAN17G3087 Fragaria x ananassa HOM05D003015 ORTHO05D003733 4.8e-13 78.2 57 68.4
RcHm_v2.0_Chr4g0446281 Rosa chinensis HOM05D003015 ORTHO05D003733 4.8e-13 78.2 57 68.4
Solyc10g079190.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 4.8e-13 78.2 99 45.5
Sopen10g029840 Solanum pennellii HOM05D003015 ORTHO05D003733 4.8e-13 78.2 99 45.5
PGSC0003DMG400008145 Solanum tuberosum HOM05D003015 ORTHO05D003733 4.8e-13 78.2 99 45.5
MELO3C004123.2 Cucumis melo HOM05D003015 ORTHO05D003733 6.2e-13 77.8 57 66.7
Sabra09G0029300 Salix brachista HOM05D003015 ORTHO05D003733 6.2e-13 77.8 100 44.0
vmacro02998 Vaccinium macrocarpon HOM05D003015 ORTHO05D003733 6.2e-13 77.8 59 69.5
Atru.chr3.4062 Acer truncatum HOM05D003015 ORTHO05D003733 8.1e-13 77.4 58 63.8
ClCG02G014360 Citrullus lanatus HOM05D003015 ORTHO05D003733 8.1e-13 77.4 57 66.7
FAN07G1978 Fragaria x ananassa HOM05D003015 ORTHO05D003733 8.1e-13 77.4 57 70.2
Thecc.01G073800 Theobroma cacao HOM05D003015 ORTHO05D003733 8.1e-13 77.4 98 45.9
MSTRG.27859 Avicennia marina HOM05D003015 ORTHO05D003733 1.1e-12 77.0 57 68.4
AUR62037628 Chenopodium quinoa HOM05D003015 ORTHO05D003733 1.1e-12 77.0 101 45.5
Dinv36322 Davidia involucrata HOM05D003015 ORTHO05D003733 1.1e-12 77.0 58 67.2
MD16G1006600 Malus domestica HOM05D003015 ORTHO05D003733 1.1e-12 77.0 103 45.6
Ciclev10028282m.g Citrus clementina HOM05D003015 ORTHO05D003733 1.4e-12 76.6 108 41.7
CsaV3_2G007640 Cucumis sativus L. HOM05D003015 ORTHO05D003733 1.4e-12 76.6 57 66.7
MD01G1110000 Malus domestica HOM05D003015 ORTHO05D003733 1.4e-12 76.6 94 52.1
Peaxi162Scf00130g01131 Petunia axillaris HOM05D003015 ORTHO05D003733 1.4e-12 76.6 109 45.9
FvH4_4g11590 Fragaria vesca HOM05D003015 ORTHO05D003733 1.8e-12 76.3 57 70.2
FAN12G3854 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.8e-12 76.3 57 70.2
Manes.01G165200 Manihot esculenta HOM05D003015 ORTHO05D003733 1.8e-12 76.3 58 63.8
Sabra09G0029100 Salix brachista HOM05D003015 ORTHO05D003733 2.4e-12 75.9 100 43.0
Sc20g0003200 Simmondsia chinensis HOM05D003015 ORTHO05D003733 2.4e-12 75.9 98 48.0
Solyc04g017710.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 2.4e-12 75.9 56 67.9
Sopen04g008800 Solanum pennellii HOM05D003015 ORTHO05D003733 2.4e-12 75.9 56 67.9
GSVIVG01024807001 Vitis vinifera HOM05D003015 ORTHO05D003733 3.1e-12 75.5 58 63.8
CSS0005232 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 4.0e-12 75.1 57 64.9
HanXRQChr01g0027201 Helianthus annuus HOM05D003015 ORTHO05D003733 4.0e-12 75.1 58 70.7
Manes.02G122600 Manihot esculenta HOM05D003015 ORTHO05D003733 4.0e-12 75.1 58 63.8
Lj2A1075T34 Lonicera japonica HOM05D003015 ORTHO05D003733 5.3e-12 74.7 58 65.5
Nn3g19364 Nelumbo nucifera HOM05D003015 ORTHO05D003733 5.3e-12 74.7 59 62.7
Sed0025661 Sechium edule HOM05D003015 ORTHO05D003733 5.3e-12 74.7 56 66.1
AUR62041065 Chenopodium quinoa HOM05D003015 ORTHO05D003733 6.9e-12 74.3 58 63.8
TWI75G0619 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 6.9e-12 74.3 107 42.1
SGA_v2.0_scaffold8G04438 Striga asiatica HOM05D003015 ORTHO05D003733 9.0e-12 73.9 56 64.3
unitig_747.g21268 Utricularia gibba HOM05D003015 ORTHO05D003733 1.5e-11 73.2 55 58.2
vmacro06938 Vaccinium macrocarpon HOM05D003015 ORTHO05D003733 1.5e-11 73.2 59 67.8
ATR0584G134 Amborella trichopoda HOM05D003015 ORTHO05D003733 2.6e-11 72.4 59 59.3
CDE02G0190 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 3.4e-11 72.0 106 41.5
CDE04G0464 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 3.4e-11 72.0 105 41.0
DCAR_006673 Daucus carota HOM05D003015 ORTHO05D003733 3.4e-11 72.0 56 66.1
Lj5A264T26 Lonicera japonica HOM05D003015 ORTHO05D003733 3.4e-11 72.0 58 63.8
HanXRQChr11g0338781 Helianthus annuus HOM05D003015 ORTHO05D003733 4.5e-11 71.6 113 44.2
SEGI_12275 Sequoiadendron giganteum HOM05D003015 ORTHO05D003733 4.5e-11 71.6 99 39.4
Migut.N00830 Erythranthe guttata HOM05D003015 ORTHO05D003733 5.8e-11 71.2 96 44.8
SHI06627 Sapria himalayana HOM05D003015 ORTHO05D003733 5.8e-11 71.2 111 41.4
SHI07211 Sapria himalayana HOM05D003015 ORTHO05D003733 5.8e-11 71.2 111 41.4
A04p22550 Brassica napus HOM05D003015 ORTHO05D003733 7.6e-11 70.9 95 64.2
Pp3c2_11360 Physcomitrium patens HOM05D003015 ORTHO05D003733 9.9e-11 70.5 105 46.7
BraA04t17800Z Brassica rapa HOM05D003015 ORTHO05D003733 1.3e-10 70.1 95 64.2
ECA240G0521 Erigeron canadensis HOM05D003015 ORTHO05D003733 1.3e-10 70.1 58 63.8
TWI31G1171 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 1.3e-10 70.1 105 41.9
HPP92_010595 Vanilla planifolia HOM05D003015 ORTHO05D003733 1.3e-10 70.1 59 61.0
Lsat_1_v5_gn_7_76100 Lactuca sativa HOM05D003015 ORTHO05D003733 1.7e-10 69.7 102 42.2
ATR0584G244 Amborella trichopoda HOM05D003015 ORTHO05D003733 2.9e-10 68.9 59 59.3
AagrBONN_evm.TU.Sc2ySwM_117.2733 Anthoceros agrestis HOM05D003015 ORTHO05D003733 6.4e-10 67.8 64 50.0
BcaB06g28319 Brassica carinata HOM05D003015 ORTHO05D003733 6.4e-10 67.8 94 61.7
Mapoly0103s0034 Marchantia polymorpha HOM05D003015 ORTHO05D003733 8.4e-10 67.4 110 51.8
C04p53580 Brassica napus HOM05D012303 ORTHO05D014119 1.9e-09 66.2 89 47.2
BolC4t26913H Brassica oleracea HOM05D012303 ORTHO05D014119 1.9e-09 66.2 89 47.2
Lsat_1_v5_gn_9_120400 Lactuca sativa HOM05D003015 ORTHO05D003733 3.2e-09 65.5 98 41.8
C03p79310 Brassica napus HOM05D012303 ORTHO05D014119 7.1e-09 64.3 89 46.1
BolC3t20174H Brassica oleracea HOM05D012303 ORTHO05D014119 7.1e-09 64.3 89 46.1
AL2G11400 Arabidopsis lyrata HOM05D003015 ORTHO05D026765 2.1e-08 62.8 47 63.8
C05p28810 Brassica napus HOM05D012303 ORTHO05D014119 2.1e-08 62.8 89 44.9
BolC5t31598H Brassica oleracea HOM05D012303 ORTHO05D014119 2.1e-08 62.8 89 44.9
PSO339G6468 Papaver somniferum HOM05D003015 ORTHO05D003733 2.1e-08 62.8 110 38.2
PSO384G4602 Papaver somniferum HOM05D003015 ORTHO05D003733 2.1e-08 62.8 110 38.2
A09p37760 Brassica napus HOM05D012303 ORTHO05D014119 2.7e-08 62.4 89 44.9
Aqoxy1G00721 Aquilegia oxysepala HOM05D003015 ORTHO05D003733 7.9e-08 60.8 110 48.2
A09p37750 Brassica napus HOM05D012303 ORTHO05D014119 7.9e-08 60.8 89 44.9
RcHm_v2.0_Chr1g0337351 Rosa chinensis HOM05D003015 ORTHO05D003733 7.9e-08 60.8 65 46.2
BcaB02g10264 Brassica carinata HOM05D003015 ORTHO05D039340 3.0e-07 58.9 48 60.4
BcaC06g32186 Brassica carinata HOM05D003015 ORTHO05D003733 3.9e-07 58.5 35 74.3
BolC8t50674H Brassica oleracea HOM05D012303 ORTHO05D014119 5.1e-07 58.2 89 43.8
BcaC02g08510 Brassica carinata HOM05D012303 ORTHO05D014119 1.1e-06 57.0 84 44.0
Migut.N00829 Erythranthe guttata HOM05D003015 ORTHO05D003733 1.5e-06 56.6 52 55.8
Pp3c14_6200 Physcomitrium patens HOM05D003015 ORTHO05D003733 1.5e-06 56.6 65 43.1
Pp3c14_6210 Physcomitrium patens HOM05D003015 ORTHO05D003733 1.5e-06 56.6 65 43.1
FAN06G0288 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.9e-06 56.2 50 54.0
BraA09t40423Z Brassica rapa HOM05D012303 ORTHO05D014119 2.5e-06 55.8 46 69.6
BcaC01g00400 Brassica carinata HOM05D012303 ORTHO05D014119 4.3e-06 55.1 84 42.9
FvH4_7g07370 Fragaria vesca HOM05D003015 ORTHO05D003733 5.6e-06 54.7 50 50.0
FAN10G3991 Fragaria x ananassa HOM05D003015 ORTHO05D003733 9.6e-06 53.9 50 52.0


User provided reference genes

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