Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR068350 Cardamine hirsuta HOM05D001201 ORTHO05D001100 8.9e-43 176.4 82 100.0
CARHR208710 Cardamine hirsuta HOM05D001201 ORTHO05D001100 5.3e-27 124.0 79 83.5
Carub.0006s0350 Capsella rubella HOM05D001201 ORTHO05D001100 3.8e-25 117.9 70 84.3
AL6G14210 Arabidopsis lyrata HOM05D001201 ORTHO05D001100 1.6e-23 112.5 65 86.2
Sp6g38200 Schrenkiella parvula HOM05D001201 ORTHO05D001100 1.6e-23 112.5 82 70.7
A10p31520 Brassica napus HOM05D001201 ORTHO05D001100 2.7e-23 111.7 82 69.5
BraA10t45198Z Brassica rapa HOM05D001201 ORTHO05D001100 2.7e-23 111.7 82 69.5
AT5G04560 Arabidopsis thaliana HOM05D001201 ORTHO05D001100 8.7e-22 106.7 65 83.1
Aa31LG11G5450 Aethionema arabicum HOM05D001201 ORTHO05D001100 1.3e-20 102.8 70 71.4
BcaB08g35661 Brassica carinata HOM05D001201 ORTHO05D001100 1.3e-20 102.8 75 72.0
BcaC01g01492 Brassica carinata HOM05D001201 ORTHO05D001100 4.8e-20 100.9 78 64.1
THA.LOC104816454 Tarenaya hassleriana HOM05D001201 ORTHO05D001100 3.9e-14 81.3 72 63.9
BcaC06g32166 Brassica carinata HOM05D001201 ORTHO05D001100 1.5e-13 79.3 72 58.3
C09p72210 Brassica napus HOM05D001201 ORTHO05D001100 1.5e-13 79.3 72 58.3
BolC9t59965H Brassica oleracea HOM05D001201 ORTHO05D001100 1.5e-13 79.3 72 58.3
Duzib114G0475 Durio zibethinus HOM05D001201 ORTHO05D001100 1.5e-13 79.3 70 62.9
CiPaw.13G036100 Carya illinoinensis HOM05D001201 ORTHO05D001100 3.3e-13 78.2 76 56.6
CANSAT25G0803 Cannabis sativa HOM05D001201 ORTHO05D001100 5.7e-13 77.4 80 52.5
Ciclev10030474m.g Citrus clementina HOM05D001201 ORTHO05D001100 7.4e-13 77.0 63 65.1
Lj3A932G50 Lonicera japonica HOM05D001201 ORTHO05D001100 2.1e-12 75.5 66 62.1
CANSAT56G1981 Cannabis sativa HOM05D001201 ORTHO05D001100 2.8e-12 75.1 68 58.8
CiPaw.14G028400 Carya illinoinensis HOM05D001201 ORTHO05D001100 3.7e-12 74.7 78 53.8
MD02G1245400 Malus domestica HOM05D001201 ORTHO05D001100 4.8e-12 74.3 83 53.0
CSS0047502 Camellia sinensis var. sinensis HOM05D001201 ORTHO05D001100 6.2e-12 73.9 57 66.7
Dinv20843 Davidia involucrata HOM05D001201 ORTHO05D001100 6.2e-12 73.9 68 57.4
TWI63G1581 Tripterygium wilfordii HOM05D001201 ORTHO05D001100 6.2e-12 73.9 66 59.1
Cfa011221 Carpinus fangiana HOM05D001201 ORTHO05D001100 8.2e-12 73.6 66 59.1
Haze_02614 Corylus avellana HOM05D001201 ORTHO05D001100 8.2e-12 73.6 66 59.1
Sc09g0005580 Simmondsia chinensis HOM05D001201 ORTHO05D001100 3.1e-11 71.6 74 52.7
MELO3C012368.2 Cucumis melo HOM05D001201 ORTHO05D001100 4.0e-11 71.2 70 55.7
Prupe.7G005000 Prunus persica HOM05D001201 ORTHO05D001100 4.0e-11 71.2 61 59.0
Oeu027978.3 Olea europaea HOM05D001201 ORTHO05D001100 5.3e-11 70.9 72 55.6
Nn2g13995 Nelumbo nucifera HOM05D001201 ORTHO05D001100 6.9e-11 70.5 68 57.4
Actinidia18574 Actinidia chinensis HOM05D001201 ORTHO05D001100 1.5e-10 69.3 50 68.0
TWI38G1634 Tripterygium wilfordii HOM05D001201 ORTHO05D001100 1.5e-10 69.3 66 54.5
TAR369G0069 Trochodendron aralioides HOM05D001201 ORTHO05D001100 1.5e-10 69.3 76 52.6
Rhsim03G0106400 Rhododendron simsii HOM05D001201 ORTHO05D001100 3.4e-10 68.2 62 56.5
vmacro07222 Vaccinium macrocarpon HOM05D001201 ORTHO05D001100 3.4e-10 68.2 62 56.5
Thecc.10G101300 Theobroma cacao HOM05D001201 ORTHO05D001100 4.5e-10 67.8 78 52.6
CsaV3_5G035660 Cucumis sativus L. HOM05D001201 ORTHO05D001100 5.8e-10 67.4 70 52.9
ClCG05G021570 Citrullus lanatus HOM05D001201 ORTHO05D001100 7.6e-10 67.0 70 52.9
Gohir.A01G129700 Gossypium hirsutum HOM05D001201 ORTHO05D001100 7.6e-10 67.0 66 59.1
Gohir.D01G119000 Gossypium hirsutum HOM05D001201 ORTHO05D001100 7.6e-10 67.0 66 59.1
Gorai.002G145100 Gossypium raimondii HOM05D001201 ORTHO05D001100 7.6e-10 67.0 66 59.1
MD09G1259100 Malus domestica HOM05D001201 ORTHO05D001100 7.6e-10 67.0 61 55.7
GSVIVG01033777001 Vitis vinifera HOM05D001201 ORTHO05D001100 7.6e-10 67.0 66 54.5
Migut.J00987 Erythranthe guttata HOM05D001201 ORTHO05D001100 1.7e-09 65.9 50 68.0
Lsat_1_v5_gn_2_23100 Lactuca sativa HOM05D001201 ORTHO05D001100 1.7e-09 65.9 70 51.4
COL.COLO4_29819 Corchorus olitorius HOM05D001201 ORTHO05D001100 2.2e-09 65.5 65 55.4
HanXRQChr14g0456351 Helianthus annuus HOM05D001201 ORTHO05D001100 2.2e-09 65.5 66 50.0
Manes.10G055200 Manihot esculenta HOM05D001201 ORTHO05D001100 2.2e-09 65.5 66 56.1
Prupe.2G089400 Prunus persica HOM05D001201 ORTHO05D001100 2.2e-09 65.5 67 55.2
Nn6g33515 Nelumbo nucifera HOM05D001201 ORTHO05D001100 2.9e-09 65.1 56 60.7
PSO339G3200 Papaver somniferum HOM05D001201 ORTHO05D001100 2.9e-09 65.1 72 51.4
Sabra10G0181700 Salix brachista HOM05D001201 ORTHO05D001100 2.9e-09 65.1 66 56.1
Nn1g00052 Nelumbo nucifera HOM05D001201 ORTHO05D001100 3.8e-09 64.7 68 54.4
Nn1g09481 Nelumbo nucifera HOM05D001201 ORTHO05D001100 3.8e-09 64.7 68 54.4
Potri.010G234400 Populus trichocarpa HOM05D001201 ORTHO05D001100 3.8e-09 64.7 62 56.5
Dinv21259 Davidia involucrata HOM05D001201 ORTHO05D001100 5.0e-09 64.3 50 68.0
Lsat_1_v5_gn_0_17001 Lactuca sativa HOM05D001201 ORTHO05D001100 5.0e-09 64.3 68 51.5
MD17G1253600 Malus domestica HOM05D001201 ORTHO05D001100 5.0e-09 64.3 55 60.0
PSO063G2265 Papaver somniferum HOM05D001201 ORTHO05D001100 5.0e-09 64.3 72 50.0
GSVIVG01034713001 Vitis vinifera HOM05D001201 ORTHO05D001100 5.0e-09 64.3 78 47.4
ECA238G1134 Erigeron canadensis HOM05D001201 ORTHO05D001100 6.5e-09 63.9 66 53.0
Gohir.D04G104500 Gossypium hirsutum HOM05D001201 ORTHO05D001100 6.5e-09 63.9 54 59.3
Gorai.009G408300 Gossypium raimondii HOM05D001201 ORTHO05D001100 6.5e-09 63.9 54 59.3
Manes.07G091800 Manihot esculenta HOM05D001201 ORTHO05D001100 6.5e-09 63.9 66 53.0
Potri.008G025900 Populus trichocarpa HOM05D001201 ORTHO05D001100 6.5e-09 63.9 66 53.0
Atru.chr8.1639 Acer truncatum HOM05D001201 ORTHO05D001100 8.4e-09 63.5 50 66.0
Cpa.g.sc128.52 Carica papaya HOM05D001201 ORTHO05D001100 8.4e-09 63.5 63 52.4
COL.COLO4_27244 Corchorus olitorius HOM05D001201 ORTHO05D001100 8.4e-09 63.5 70 55.7
TAR623G1502 Trochodendron aralioides HOM05D001201 ORTHO05D001100 8.4e-09 63.5 55 60.0
Ciclev10010892m.g Citrus clementina HOM05D001201 ORTHO05D001100 1.1e-08 63.2 56 57.1
Gohir.A04G066400 Gossypium hirsutum HOM05D001201 ORTHO05D001100 1.1e-08 63.2 49 63.3
Oeu026559.4 Olea europaea HOM05D001201 ORTHO05D001100 1.1e-08 63.2 52 65.4
Manes.08G020500 Manihot esculenta HOM05D001201 ORTHO05D001100 1.4e-08 62.8 62 53.2
Manes.09G060800 Manihot esculenta HOM05D001201 ORTHO05D001100 1.4e-08 62.8 62 51.6
Sed0011723 Sechium edule HOM05D001201 ORTHO05D001100 1.4e-08 62.8 70 50.0
Actinidia06708 Actinidia chinensis HOM05D001201 ORTHO05D001100 1.9e-08 62.4 50 62.0
ClCG04G009770 Citrullus lanatus HOM05D001201 ORTHO05D001100 1.9e-08 62.4 66 53.0
Atru.chr12.965 Acer truncatum HOM05D001201 ORTHO05D001100 2.5e-08 62.0 49 63.3
Sabra08G0017600 Salix brachista HOM05D001201 ORTHO05D001100 2.5e-08 62.0 62 51.6
SalBow6G6340 Salvia bowleyana HOM05D001201 ORTHO05D001100 4.2e-08 61.2 66 57.6
Dinv30660 Davidia involucrata HOM05D001201 ORTHO05D001100 5.5e-08 60.8 66 50.0
Lsat_1_v5_gn_2_102681 Lactuca sativa HOM05D001201 ORTHO05D001100 5.5e-08 60.8 49 65.3
QL04p041091 Quercus lobata HOM05D001201 ORTHO05D001100 5.5e-08 60.8 89 44.9
Sed0022197 Sechium edule HOM05D001201 ORTHO05D001100 5.5e-08 60.8 71 52.1
DCAR_006374 Daucus carota HOM05D001201 ORTHO05D001100 7.1e-08 60.5 48 62.5
Sp4g18800 Schrenkiella parvula HOM05D001201 ORTHO05D001100 7.1e-08 60.5 50 62.0
PGR044G1748 Punica granatum HOM05D001201 ORTHO05D001100 1.2e-07 59.7 63 54.0
Sed0001020 Sechium edule HOM05D001201 ORTHO05D001100 1.2e-07 59.7 52 63.5
Thecc.05G080600 Theobroma cacao HOM05D001201 ORTHO05D001100 1.2e-07 59.7 54 57.4
Cpa.g.sc5.80 Carica papaya HOM05D001201 ORTHO05D001100 1.6e-07 59.3 62 50.0
Haze_19533 Corylus avellana HOM05D001201 ORTHO05D001100 1.6e-07 59.3 50 64.0
RcHm_v2.0_Chr3g0472091 Rosa chinensis HOM05D001201 ORTHO05D001100 1.6e-07 59.3 51 66.7
Sabra06G0090700 Salix brachista HOM05D001201 ORTHO05D001100 1.6e-07 59.3 62 50.0
AT2G36490 Arabidopsis thaliana HOM05D001201 ORTHO05D001100 2.1e-07 58.9 49 61.2
CiPaw.09G008500 Carya illinoinensis HOM05D001201 ORTHO05D001100 2.1e-07 58.9 66 53.0
RcHm_v2.0_Chr6g0267361 Rosa chinensis HOM05D001201 ORTHO05D001100 2.1e-07 58.9 51 58.8
TPR.G10256 Trifolium pratense HOM05D001201 ORTHO05D001100 2.1e-07 58.9 69 49.3
HPP92_026209 Vanilla planifolia HOM05D001201 ORTHO05D001100 2.1e-07 58.9 72 47.2
FAN14G4458 Fragaria x ananassa HOM05D001201 ORTHO05D001100 2.7e-07 58.5 51 70.6
PSO339G5206 Papaver somniferum HOM05D001201 ORTHO05D001100 2.7e-07 58.5 49 59.2
PSO384G4302 Papaver somniferum HOM05D001201 ORTHO05D001100 2.7e-07 58.5 49 59.2
Psat6g079040 Pisum sativum HOM05D001201 ORTHO05D001100 3.5e-07 58.2 49 63.3
Prupe.7G118000 Prunus persica HOM05D001201 ORTHO05D001100 3.5e-07 58.2 60 55.0
Sed0026916 Sechium edule HOM05D001201 ORTHO05D001100 3.5e-07 58.2 56 60.7
TWI53G2113 Tripterygium wilfordii HOM05D001201 ORTHO05D001100 3.5e-07 58.2 57 56.1
BcaB02g09350 Brassica carinata HOM05D001201 ORTHO05D001100 4.6e-07 57.8 45 64.4
BcaNung07061 Brassica carinata HOM05D001201 ORTHO05D001100 4.6e-07 57.8 45 64.4
Lalb_Chr01g0018331 Lupinus albus HOM05D001201 ORTHO05D001100 4.6e-07 57.8 55 54.5
SGA_v2.0_scaffold40G15408 Striga asiatica HOM05D001201 ORTHO05D001100 4.6e-07 57.8 75 45.3
TWI77G0704 Tripterygium wilfordii HOM05D001201 ORTHO05D001100 4.6e-07 57.8 57 56.1
Carub.0004s1831 Capsella rubella HOM05D001201 ORTHO05D001100 6.1e-07 57.4 49 59.2
CsaV3_3G036780 Cucumis sativus L. HOM05D001201 ORTHO05D001100 6.1e-07 57.4 55 60.0
FAN02G1301 Fragaria x ananassa HOM05D001201 ORTHO05D001100 6.1e-07 57.4 51 68.6
FAN05G3005 Fragaria x ananassa HOM05D001201 ORTHO05D001100 6.1e-07 57.4 51 68.6
FAN05G4586 Fragaria x ananassa HOM05D001201 ORTHO05D001100 6.1e-07 57.4 51 68.6
FAN09G1539 Fragaria x ananassa HOM05D001201 ORTHO05D001100 6.1e-07 57.4 51 68.6
Gohir.D09G137800 Gossypium hirsutum HOM05D001201 ORTHO05D001100 6.1e-07 57.4 48 60.4
Gorai.006G158300 Gossypium raimondii HOM05D001201 ORTHO05D001100 6.1e-07 57.4 48 60.4
Oeu059852.1 Olea europaea HOM05D001201 ORTHO05D001100 6.1e-07 57.4 55 58.2
Psat3g035920 Pisum sativum HOM05D001201 ORTHO05D001100 6.1e-07 57.4 49 57.1
Ca_11125_v3 Cicer arietinum L. HOM05D001201 ORTHO05D001100 7.9e-07 57.0 68 45.6
Ca_20517_v3 Cicer arietinum L. HOM05D001201 ORTHO05D001100 7.9e-07 57.0 68 45.6
FvH4_6g17860 Fragaria vesca HOM05D001201 ORTHO05D001100 7.9e-07 57.0 51 68.6
QL07p040602 Quercus lobata HOM05D001201 ORTHO05D001100 7.9e-07 57.0 50 64.0
TAR374G1072 Trochodendron aralioides HOM05D001201 ORTHO05D001100 7.9e-07 57.0 49 59.2
AL4G32670 Arabidopsis lyrata HOM05D001201 ORTHO05D001100 1.0e-06 56.6 49 59.2
Ca_11623_v3 Cicer arietinum L. HOM05D001201 ORTHO05D001100 1.0e-06 56.6 49 57.1
MELO3C024516.2 Cucumis melo HOM05D001201 ORTHO05D001100 1.0e-06 56.6 50 62.0
CsaV3_6G040410 Cucumis sativus L. HOM05D001201 ORTHO05D001100 1.0e-06 56.6 50 62.0
Duzib093G0950 Durio zibethinus HOM05D001201 ORTHO05D001100 1.3e-06 56.2 52 59.6
VMungo0720G0212 Vigna mungo HOM05D001201 ORTHO05D001100 1.3e-06 56.2 61 49.2
AL4G32680 Arabidopsis lyrata HOM05D001201 ORTHO05D001100 1.8e-06 55.8 63 49.2
Glyma.13G151000 Glycine max HOM05D001201 ORTHO05D001100 1.8e-06 55.8 61 49.2
SGA_v2.0_scaffold259G45831 Striga asiatica HOM05D001201 ORTHO05D001100 1.8e-06 55.8 51 52.9
BcaC02g11765 Brassica carinata HOM05D001201 ORTHO05D001100 2.3e-06 55.5 46 60.9
A05p09310 Brassica napus HOM05D001201 ORTHO05D001100 2.3e-06 55.5 46 60.9
C04p11600 Brassica napus HOM05D001201 ORTHO05D001100 2.3e-06 55.5 46 60.9
BolC4t22808H Brassica oleracea HOM05D001201 ORTHO05D001100 2.3e-06 55.5 46 60.9
BraA05t19888Z Brassica rapa HOM05D001201 ORTHO05D001100 2.3e-06 55.5 46 60.9
Migut.F00888 Erythranthe guttata HOM05D001201 ORTHO05D001100 2.3e-06 55.5 56 53.6
Gohir.A09G136700 Gossypium hirsutum HOM05D001201 ORTHO05D001100 2.3e-06 55.5 48 58.3
Lj5g0003988 Lotus japonicus HOM05D001201 ORTHO05D001100 2.3e-06 55.5 49 61.2
Lj5g0026634 Lotus japonicus HOM05D001201 ORTHO05D001100 2.3e-06 55.5 60 50.0
Lalb_Chr21g0315671 Lupinus albus HOM05D001201 ORTHO05D001100 2.3e-06 55.5 56 46.4
FvH4_3g04410 Fragaria vesca HOM05D001201 ORTHO05D001100 3.0e-06 55.1 51 64.7
FAN11G1782 Fragaria x ananassa HOM05D001201 ORTHO05D001100 3.0e-06 55.1 51 64.7
FAN16G0828 Fragaria x ananassa HOM05D001201 ORTHO05D001100 3.0e-06 55.1 51 64.7
Lj3A1003T41 Lonicera japonica HOM05D001201 ORTHO05D001100 3.0e-06 55.1 64 53.1
Psat6g177080 Pisum sativum HOM05D001201 ORTHO05D001100 3.0e-06 55.1 55 56.4
TAR633G1723 Trochodendron aralioides HOM05D001201 ORTHO05D001100 3.0e-06 55.1 55 50.9
ATR0820G039 Amborella trichopoda HOM05D001201 ORTHO05D001100 3.9e-06 54.7 60 51.7
Aqoxy1G00942 Aquilegia oxysepala HOM05D001201 ORTHO05D001100 3.9e-06 54.7 74 45.9
CARHR130800 Cardamine hirsuta HOM05D001201 ORTHO05D001100 3.9e-06 54.7 54 53.7
Ca_10493_v3 Cicer arietinum L. HOM05D001201 ORTHO05D001100 3.9e-06 54.7 71 46.5
MELO3C009432.2 Cucumis melo HOM05D001201 ORTHO05D001100 3.9e-06 54.7 56 57.1
HanXRQChr04g0108701 Helianthus annuus HOM05D001201 ORTHO05D001100 3.9e-06 54.7 66 47.0
HPP92_005760 Vanilla planifolia HOM05D001201 ORTHO05D001100 3.9e-06 54.7 49 57.1
Ah.08g210980 Amaranthus hybridus HOM05D001201 ORTHO05D001100 5.1e-06 54.3 51 60.8
arahy.Tifrunner.gnm1.ann1.66FLD0 Arachis hypogaea HOM05D001201 ORTHO05D001100 5.1e-06 54.3 64 51.6
CDE03G0091 Ceratophyllum demersum HOM05D001201 ORTHO05D001100 5.1e-06 54.3 46 52.2
Medtr7g103680 Medicago truncatula HOM05D001201 ORTHO05D001100 5.1e-06 54.3 62 45.2
Phvul.007G223600 Phaseolus vulgaris HOM05D001201 ORTHO05D001100 5.1e-06 54.3 61 47.5
Potri.006G116000 Populus trichocarpa HOM05D001201 ORTHO05D001100 5.1e-06 54.3 60 50.0
CDE04G3083 Ceratophyllum demersum HOM05D001201 ORTHO05D001100 6.7e-06 53.9 45 57.8
Cc02_g10250 Coffea canephora HOM05D001201 ORTHO05D001100 6.7e-06 53.9 55 52.7
Eucgr.J01016 Eucalyptus grandis HOM05D001201 ORTHO05D001100 6.7e-06 53.9 46 65.2
Carub.0004s1830 Capsella rubella HOM05D001201 ORTHO05D001100 8.7e-06 53.5 43 62.8
ClCG10G019400 Citrullus lanatus HOM05D001201 ORTHO05D001100 8.7e-06 53.5 52 61.5
ECA232G0849 Erigeron canadensis HOM05D001201 ORTHO05D001100 8.7e-06 53.5 49 55.1
FAN21G3547 Fragaria x ananassa HOM05D001201 ORTHO05D001100 8.7e-06 53.5 51 62.7
Glyma.10G065900 Glycine max HOM05D001201 ORTHO05D001100 8.7e-06 53.5 55 50.9
MD11G1157400 Malus domestica HOM05D001201 ORTHO05D001100 8.7e-06 53.5 52 51.9


User provided reference genes

Program Settings