Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR056710 Cardamine hirsuta HOM05D000216 ORTHO05D000634 2.1e-27 124.8 57 100.0
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 1.0e-21 105.9 57 87.7
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 1.8e-21 105.1 57 87.7
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 1.8e-21 105.1 57 87.7
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 7.4e-20 99.8 57 84.2
Gorai.013G017900 Gossypium raimondii HOM05D000216 ORTHO05D000634 4.8e-19 97.1 57 84.2
Gohir.A05G086066 Gossypium hirsutum HOM05D000216 ORTHO05D000634 8.2e-19 96.3 57 84.2
Nn092s42879 Nelumbo nucifera HOM05D000216 ORTHO05D000634 3.1e-18 94.4 57 82.5
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 4.1e-18 94.0 57 82.5
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 5.3e-18 93.6 57 80.7
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 6.9e-18 93.2 57 82.5
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 6.9e-18 93.2 57 82.5
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 6.9e-18 93.2 57 82.5
CAN.G939.12 Capsicum annuum HOM05D000216 ORTHO05D000634 6.9e-18 93.2 57 82.5
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 6.9e-18 93.2 57 82.5
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 6.9e-18 93.2 57 82.5
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 6.9e-18 93.2 57 82.5
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 6.9e-18 93.2 57 82.5
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 6.9e-18 93.2 57 82.5
QL93p0837_0001 Quercus lobata HOM05D000216 ORTHO05D000634 9.0e-18 92.8 57 82.5
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 1.2e-17 92.4 57 80.7
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 3.4e-17 90.9 57 78.9
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 3.4e-17 90.9 57 78.9
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.4e-17 90.9 56 82.1
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 4.5e-17 90.5 57 78.9
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 7.6e-17 89.7 57 78.9
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 1.0e-16 89.4 57 78.9
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 1.7e-16 88.6 57 78.9
CSS0009554 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D000634 2.2e-16 88.2 57 78.9
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 2.2e-16 88.2 57 78.9
PGSC0003DMG400020297 Solanum tuberosum HOM05D000216 ORTHO05D000634 2.2e-16 88.2 57 77.2
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 3.8e-16 87.4 59 79.7
MELO3C001268.2 Cucumis melo HOM05D000216 ORTHO05D000634 5.0e-16 87.0 57 75.4
MELO3C028015.2 Cucumis melo HOM05D000216 ORTHO05D000634 5.0e-16 87.0 57 75.4
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 5.0e-16 87.0 57 75.4
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 5.0e-16 87.0 57 77.2
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 6.5e-16 86.7 54 79.6
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 8.5e-16 86.3 57 75.4
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 8.5e-16 86.3 57 75.4
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 1.1e-15 85.9 57 75.4
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.5e-15 84.7 57 73.7
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 2.5e-15 84.7 57 75.4
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 4.2e-15 84.0 57 73.7
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 4.2e-15 84.0 57 73.7
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 4.2e-15 84.0 57 73.7
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 4.2e-15 84.0 57 73.7
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 4.2e-15 84.0 57 73.7
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 7.2e-15 83.2 57 71.9
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 9.3e-15 82.8 51 80.4
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 9.3e-15 82.8 57 71.9
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.2e-14 82.4 57 71.9
MELO3C028016.2 Cucumis melo HOM05D000216 ORTHO05D000634 1.2e-14 82.4 57 73.7
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 1.2e-14 82.4 57 71.9
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.7e-14 81.3 57 71.9
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.7e-14 81.3 57 71.9
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.7e-14 81.3 57 71.9
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.7e-14 81.3 57 71.9
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.7e-14 81.3 57 71.9
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.7e-14 81.3 57 71.9
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.7e-14 81.3 57 71.9
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.7e-14 81.3 57 71.9
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.7e-14 81.3 57 71.9
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 4.6e-14 80.5 58 72.4
Gorai.011G135800 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.0e-13 79.3 50 78.0
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 2.3e-13 78.2 59 69.5
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 3.0e-13 77.8 57 71.9
HPP92_007917 Vanilla planifolia HOM05D000216 ORTHO05D000634 1.5e-12 75.5 42 83.3
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 2.5e-12 74.7 59 66.1
SGA_v2.0_scaffold61G21222 Striga asiatica HOM05D000540 ORTHO05D000681 4.3e-12 73.9 57 70.2
Nn3g18459 Nelumbo nucifera HOM05D000216 ORTHO05D000634 5.7e-12 73.6 40 85.0
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 7.4e-12 73.2 42 81.0
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.4e-12 73.2 46 78.3
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 1.7e-11 72.0 42 78.6
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 2.2e-11 71.6 44 81.8
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 2.8e-11 71.2 57 66.7
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 1.4e-10 68.9 57 63.2
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.4e-10 68.9 40 80.0
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.8e-10 68.6 40 80.0
HanXRQChr10g0282521 Helianthus annuus HOM05D000216 ORTHO05D000634 1.8e-10 68.6 40 80.0
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.8e-10 68.6 40 80.0
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 1.8e-10 68.6 40 80.0
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 1.8e-10 68.6 40 80.0
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 1.8e-10 68.6 40 80.0
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 1.8e-10 68.6 40 80.0
HPP92_021700 Vanilla planifolia HOM05D000216 ORTHO05D000634 1.8e-10 68.6 54 63.0
Pp3c7_4990 Physcomitrium patens HOM05D000216 ORTHO05D000634 3.1e-10 67.8 60 60.0
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 6.9e-10 66.6 41 75.6
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 9.1e-10 66.2 37 83.8
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 9.1e-10 66.2 38 81.6
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.2e-09 65.9 36 86.1
MELO3C032363.2 Cucumis melo HOM05D000216 ORTHO05D000634 1.5e-09 65.5 41 75.6
Gohir.D10G123250 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.6e-09 64.7 48 66.7
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 2.6e-09 64.7 41 75.6
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 5.9e-09 63.5 38 78.9
SEGI_01684 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 5.9e-09 63.5 38 73.7
SEGI_23567 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 5.9e-09 63.5 38 73.7
SEGI_39307 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 5.9e-09 63.5 54 57.4
SEGI_05928 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 7.7e-09 63.2 37 75.7
SEGI_17366 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 7.7e-09 63.2 37 75.7
SEGI_21477 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 7.7e-09 63.2 37 75.7
SEGI_22758 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 7.7e-09 63.2 37 75.7
SEGI_24942 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 7.7e-09 63.2 37 75.7
HanXRQChr11g0322741 Helianthus annuus HOM05D000216 ORTHO05D000634 1.0e-08 62.8 40 72.5
SEGI_03649 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 2.2e-08 61.6 37 73.0
SEGI_02904 Sequoiadendron giganteum HOM05D000743 ORTHO05D000580 2.9e-08 61.2 38 71.1
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 3.8e-08 60.8 32 87.5
SEGI_00070 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 3.8e-08 60.8 35 77.1
SEGI_03518 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.8e-08 60.8 35 77.1
SEGI_07796 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 3.8e-08 60.8 35 77.1
SEGI_22490 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 3.8e-08 60.8 35 77.1
SEGI_24812 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.8e-08 60.8 35 77.1
SEGI_31181 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.8e-08 60.8 35 77.1
SEGI_35543 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 3.8e-08 60.8 35 77.1
SEGI_38828 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 3.8e-08 60.8 35 77.1
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.5e-08 60.1 35 80.0
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.1e-07 59.3 38 71.1
Lsat_1_v5_gn_3_118020 Lactuca sativa HOM05D000216 ORTHO05D000634 2.5e-07 58.2 34 82.4
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 7.2e-07 56.6 31 87.1
SEGI_01764 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 9.4e-07 56.2 35 71.4
HanXRQChr00c0125g0571741 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-06 55.8 32 84.4
HanXRQChr00c0313g0573461 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-06 55.8 32 84.4
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-06 55.8 32 84.4
HanXRQChr07g0188311 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-06 55.8 32 84.4
CAN.G100.42 Capsicum annuum HOM05D000216 ORTHO05D000634 2.1e-06 55.1 32 84.4
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.1e-06 55.1 30 86.7
CAN.G219.16 Capsicum annuum HOM05D000743 ORTHO05D000580 2.7e-06 54.7 32 81.2
Gohir.A09G103316 Gossypium hirsutum HOM05D000216 ORTHO05D000634 3.6e-06 54.3 31 83.9
Hma1.2p1_3151F.1_g333240 Hydrangea macrophylla HOM05D000175 ORTHO05D000481 3.6e-06 54.3 31 83.9
SEGI_13806 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 4.7e-06 53.9 35 68.6
Solyc08g028900.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 7.9e-06 53.1 32 84.4


User provided reference genes

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