Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 4.0e-204 714.5 363 100.0
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 2.0e-150 536.2 365 74.0
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 2.8e-149 532.3 364 72.8
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.8e-148 529.6 364 74.2
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 9.1e-148 527.3 366 74.3
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 1.2e-147 526.9 381 72.2
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 1.2e-147 526.9 365 72.6
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 4.5e-147 525.0 365 71.2
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 1.3e-146 523.5 365 71.0
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.7e-146 523.1 365 72.3
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.7e-146 523.1 380 70.5
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 2.3e-146 522.7 365 72.6
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 1.9e-145 519.6 380 70.0
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.9e-145 519.6 366 73.0
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 2.5e-145 519.2 370 72.7
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 3.3e-145 518.8 369 70.7
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 4.2e-145 518.5 364 72.0
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 7.2e-145 517.7 380 70.5
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 9.5e-145 517.3 375 70.9
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 2.8e-144 515.8 365 71.8
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 3.6e-144 515.4 381 70.9
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 3.6e-144 515.4 365 71.0
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 3.6e-144 515.4 380 68.7
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 4.7e-144 515.0 371 69.8
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 4.7e-144 515.0 374 70.6
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 1.8e-143 513.1 370 71.4
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.8e-143 513.1 364 70.9
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 2.3e-143 512.7 374 70.3
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 5.2e-143 511.5 365 70.7
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 1.5e-142 510.0 375 70.4
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 1.5e-142 510.0 366 70.2
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 2.6e-142 509.2 369 70.2
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 4.4e-142 508.4 366 71.0
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.3e-141 506.9 369 69.9
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 1.7e-141 506.5 374 70.6
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 2.2e-141 506.1 365 71.2
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 2.8e-141 505.8 379 69.1
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 3.7e-141 505.4 368 69.6
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 3.7e-141 505.4 365 70.4
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 4.9e-141 505.0 366 69.7
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 6.3e-141 504.6 368 68.5
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 8.3e-141 504.2 368 69.0
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 1.4e-140 503.4 368 69.0
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 1.8e-140 503.1 374 69.3
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 1.8e-140 503.1 379 69.1
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 3.1e-140 502.3 368 69.3
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 3.1e-140 502.3 368 68.8
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 3.1e-140 502.3 368 68.8
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 5.4e-140 501.5 381 69.3
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 9.2e-140 500.7 363 68.6
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 1.2e-139 500.4 364 69.8
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 1.2e-139 500.4 364 69.8
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 1.2e-139 500.4 363 69.4
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 2.0e-139 499.6 381 68.5
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 2.0e-139 499.6 374 68.2
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 2.7e-139 499.2 375 67.5
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 2.7e-139 499.2 372 68.5
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 2.7e-139 499.2 366 69.1
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 4.5e-139 498.4 375 68.3
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 5.9e-139 498.0 380 66.8
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 7.8e-139 497.7 364 69.2
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 1.7e-138 496.5 366 69.1
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 2.9e-138 495.7 375 67.2
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 3.8e-138 495.4 380 66.3
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 5.0e-138 495.0 376 67.3
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 2.5e-137 492.7 363 68.3
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 2.5e-137 492.7 368 67.7
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 4.3e-137 491.9 365 69.3
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 4.3e-137 491.9 364 68.1
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.3e-137 491.9 381 68.2
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 1.6e-136 490.0 363 66.9
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 2.8e-136 489.2 365 69.6
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 4.7e-136 488.4 366 70.2
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 6.1e-136 488.0 365 68.2
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 6.1e-136 488.0 363 67.8
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 2.3e-135 486.1 366 70.5
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 1.2e-134 483.8 367 68.4
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 1.5e-134 483.4 368 68.2
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 2.0e-134 483.0 368 67.7
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 4.4e-134 481.9 370 67.6
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 5.8e-134 481.5 361 68.1
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 5.8e-134 481.5 398 64.6
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 9.8e-134 480.7 369 67.5
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.3e-133 480.3 365 67.9
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 1.7e-133 479.9 365 66.3
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 2.2e-133 479.6 369 68.0
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 4.9e-133 478.4 368 67.4
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 6.4e-133 478.0 384 64.8
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 1.1e-132 477.2 365 65.8
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 1.8e-132 476.5 366 67.5
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 2.7e-131 472.6 366 65.8
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 3.0e-130 469.2 366 66.4
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.1e-129 467.2 367 66.2
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 1.5e-129 466.8 364 67.9
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 5.6e-129 464.9 355 66.5
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 5.6e-129 464.9 385 63.6
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 9.5e-129 464.2 367 65.4
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 1.2e-128 463.8 367 65.4
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-128 463.4 376 63.3
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-128 463.4 385 64.2
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 3.6e-128 462.2 368 64.9
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 6.2e-128 461.5 376 63.0
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 1.9e-124 449.9 364 65.7
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 1.5e-121 440.3 316 71.2
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 2.1e-120 436.4 362 61.9
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.1e-119 434.1 319 69.3
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 1.1e-116 424.1 365 60.5
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 2.4e-116 422.9 367 58.3
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 9.2e-116 421.0 366 61.2
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 1.6e-115 420.2 352 65.1
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 4.0e-111 405.6 381 56.2
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 6.8e-111 404.8 357 61.1
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 2.9e-109 399.4 344 60.5
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 2.9e-109 399.4 309 67.6
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 3.8e-109 399.1 388 54.6
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 3.8e-109 399.1 320 65.3
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.5e-105 387.1 361 56.0
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 4.4e-102 375.6 319 62.7
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 7.6e-102 374.8 361 55.4
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 3.5e-99 365.9 375 54.4
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 1.7e-98 363.6 301 63.8
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.1e-95 354.4 309 60.2
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 3.2e-92 342.8 274 61.7
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.1e-84 315.1 194 81.4
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.0e-69 268.1 153 85.0
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 1.2e-67 261.2 249 52.2
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 4.6e-67 259.2 161 78.9
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 1.5e-65 254.2 376 41.5
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 1.2e-62 244.6 259 51.7
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 1.2e-59 234.6 220 56.8
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 4.1e-55 219.5 324 43.2
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 4.2e-52 209.5 334 37.7
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.3e-50 203.8 160 66.9
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 1.1e-49 201.4 181 53.0
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.5e-46 189.9 168 60.1
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.2e-44 183.3 168 58.9
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 4.0e-34 149.8 133 63.2
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 8.8e-34 148.7 133 62.4
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 4.4e-33 146.4 230 37.4
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 5.7e-33 146.0 158 47.5
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.8e-32 143.7 121 63.6
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 3.7e-32 143.3 81 87.7
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.7e-24 117.9 84 70.2
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.2e-22 111.7 93 54.8
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.2e-19 101.7 115 53.9
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 4.1e-15 86.7 51 80.4
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 4.1e-15 86.7 51 80.4
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 5.6e-12 76.3 77 59.7
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 8.0e-11 72.4 193 31.6


User provided reference genes

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