Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 4.6e-160 567.8 274 100.0
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 4.4e-94 348.6 245 68.2
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.6e-91 340.1 246 66.7
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 2.0e-91 339.7 246 66.7
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 7.8e-91 337.8 246 65.4
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 7.8e-91 337.8 246 64.2
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 3.8e-90 335.5 242 66.1
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 5.0e-90 335.1 245 66.1
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 6.6e-90 334.7 244 66.8
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 1.9e-89 333.2 238 66.8
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 3.3e-89 332.4 246 65.0
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.3e-89 332.4 245 65.7
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 3.3e-89 332.4 246 63.8
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.3e-89 332.0 260 63.1
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.3e-89 332.0 238 66.8
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 5.6e-89 331.6 238 66.8
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 7.3e-89 331.3 249 65.9
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 7.3e-89 331.3 246 65.0
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 9.5e-89 330.9 239 67.4
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 2.1e-88 329.7 246 63.8
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.1e-88 329.7 250 64.8
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 2.8e-88 329.3 246 66.3
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.8e-88 329.3 242 67.4
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.6e-88 328.9 245 64.1
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 8.0e-88 327.8 238 65.5
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.0e-87 327.4 246 62.6
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.3e-87 326.2 245 64.5
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.0e-87 325.5 244 65.2
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.2e-86 323.9 245 64.1
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 2.6e-86 322.8 246 64.6
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 3.4e-86 322.4 248 63.7
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 4.4e-86 322.0 246 62.6
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.4e-86 322.0 245 63.7
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 3.7e-85 318.9 247 62.8
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 6.4e-85 318.2 254 63.0
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 8.3e-85 317.8 243 65.8
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.4e-84 317.0 245 63.3
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 2.4e-84 316.2 249 62.7
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.2e-84 315.8 246 63.8
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 4.1e-84 315.5 238 64.3
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 4.1e-84 315.5 244 60.7
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 4.6e-83 312.0 244 59.8
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 5.9e-83 311.6 239 61.1
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.7e-82 310.1 245 62.0
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 8.6e-82 307.8 246 63.0
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 5.6e-81 305.1 238 60.9
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 5.6e-81 305.1 242 60.7
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 5.6e-81 305.1 244 61.9
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 7.3e-81 304.7 247 61.9
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 1.2e-80 303.9 238 60.5
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.1e-80 303.1 237 60.3
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 3.6e-80 302.4 237 60.8
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 6.2e-80 301.6 240 60.0
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 8.0e-80 301.2 253 60.9
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.4e-79 300.4 242 59.9
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 3.1e-79 299.3 248 60.1
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 4.0e-79 298.9 248 58.9
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 4.0e-79 298.9 240 59.2
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 5.2e-79 298.5 240 60.4
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.5e-78 297.0 245 57.1
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.6e-78 296.2 237 59.5
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 3.4e-78 295.8 238 62.6
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.4e-78 295.8 239 59.8
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.4e-78 295.8 239 59.8
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 4.9e-77 292.0 252 60.3
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.9e-77 292.0 252 60.3
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 4.9e-77 292.0 249 59.8
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 7.0e-76 288.1 245 58.8
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.0e-75 286.6 243 60.1
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 7.8e-75 284.6 247 56.7
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 7.8e-75 284.6 246 55.7
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.0e-74 284.3 249 58.2
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.0e-74 284.3 240 60.0
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.0e-74 284.3 247 55.5
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.7e-74 283.5 249 55.8
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 2.3e-74 283.1 258 56.6
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 2.3e-74 283.1 239 56.5
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 2.3e-74 283.1 237 58.6
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 3.9e-74 282.3 251 56.2
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 6.6e-74 281.6 246 57.7
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.6e-74 281.2 254 55.1
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 8.6e-74 281.2 220 61.8
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 8.6e-74 281.2 237 56.5
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.1e-73 280.8 244 58.2
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 2.5e-73 279.6 244 57.8
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 2.5e-73 279.6 244 57.8
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 3.3e-73 279.3 243 57.6
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.3e-73 279.3 239 56.9
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 9.5e-73 277.7 244 57.0
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 2.1e-72 276.6 214 64.5
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.1e-72 276.6 220 61.4
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 3.1e-71 272.7 240 55.4
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 3.1e-71 272.7 240 55.4
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 3.1e-71 272.7 243 56.8
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 3.1e-71 272.7 243 56.0
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 5.2e-71 271.9 240 55.8
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 6.8e-71 271.6 250 55.6
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 8.9e-71 271.2 246 54.9
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 1.2e-70 270.8 239 53.1
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 2.0e-70 270.0 234 56.0
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.6e-70 269.6 238 54.2
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 4.4e-70 268.9 247 54.3
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 4.4e-70 268.9 240 56.2
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 4.4e-70 268.9 238 57.1
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.2e-69 266.5 250 54.0
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 2.2e-69 266.5 240 55.0
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 2.9e-69 266.2 240 53.3
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.7e-69 265.8 255 52.5
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.7e-69 265.8 255 52.5
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 4.9e-69 265.4 247 51.8
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 4.9e-69 265.4 247 51.8
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 6.4e-69 265.0 249 51.8
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 6.4e-69 265.0 244 54.9
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 8.3e-69 264.6 240 54.6
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 8.3e-69 264.6 277 50.9
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.1e-68 264.2 244 50.8
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.1e-68 264.2 240 54.2
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.9e-68 263.5 240 55.4
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 5.4e-68 261.9 267 49.1
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 4.6e-67 258.8 251 53.4
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.3e-66 257.3 238 53.4
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.3e-66 257.3 207 60.9
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 1.3e-66 257.3 248 54.0
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 1.7e-66 256.9 238 54.2
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.0e-66 256.1 250 52.4
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 3.9e-66 255.8 227 55.9
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 5.1e-66 255.4 240 52.1
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 5.1e-66 255.4 240 54.6
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.1e-66 255.4 255 52.2
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 6.6e-66 255.0 258 52.3
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 1.1e-65 254.2 266 48.5
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 1.1e-65 254.2 266 48.5
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.6e-64 249.2 247 54.7
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 6.2e-64 248.4 244 50.0
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 8.1e-64 248.1 238 52.9
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.1e-63 247.7 247 54.3
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.4e-63 247.3 208 60.1
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 6.8e-63 245.0 235 50.2
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.8e-63 245.0 207 58.0
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 8.9e-63 244.6 237 51.1
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.5e-62 243.8 220 55.9
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.3e-61 240.7 254 49.6
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 2.7e-59 233.0 244 48.8
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.3e-58 230.7 241 51.5
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 2.3e-58 229.9 262 46.6
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 5.1e-58 228.8 212 51.9
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 3.3e-57 226.1 234 49.1
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 2.1e-56 223.4 227 53.3
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.1e-55 221.1 237 47.7
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 3.4e-54 216.1 240 47.1
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.8e-54 215.3 163 60.7
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.6e-51 207.2 242 45.0
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.3e-50 204.1 187 56.7
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 3.0e-50 203.0 163 57.1
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 3.0e-50 203.0 177 55.4
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 6.6e-50 201.8 159 62.9
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.1e-49 201.1 264 41.7
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.5e-46 189.1 159 57.2
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 8.4e-45 184.9 266 37.6
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.4e-44 182.2 254 41.7
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 3.9e-42 176.0 212 46.7
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 8.7e-42 174.9 204 48.0
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 4.9e-37 159.1 147 53.7
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.1e-33 147.9 105 65.7
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 2.4e-31 140.2 119 57.1
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.9e-31 138.7 195 40.5
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 2.6e-30 136.7 160 42.5
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 4.2e-28 129.4 124 54.0
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 5.5e-28 129.0 118 55.1
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 3.5e-27 126.3 146 47.3
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.9e-25 120.6 107 54.2
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.5e-25 120.2 92 67.4
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 2.4e-23 113.6 170 38.2
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 1.7e-21 107.5 190 32.1
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 1.4e-20 104.4 76 63.2
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 2.1e-19 100.5 81 56.8
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 4.6e-19 99.4 89 55.1
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.5e-17 94.4 136 39.7
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 3.7e-16 89.7 80 52.5
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.8e-16 89.4 98 46.9
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 1.4e-10 71.2 63 52.4
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 3.0e-10 70.1 177 26.0
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 2.8e-08 63.5 132 31.8


User provided reference genes

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