Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.8e-95 353.2 282 100.0
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 9.8e-81 304.3 284 76.1
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 3.7e-80 302.4 163 94.5
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 4.9e-80 302.0 284 74.3
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-79 300.8 284 79.2
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 4.1e-79 298.9 289 71.3
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 3.8e-77 292.4 284 72.9
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 8.6e-77 291.2 163 90.2
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 4.2e-76 288.9 163 90.8
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 9.5e-76 287.7 163 90.2
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.6e-75 287.0 164 90.9
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.6e-75 287.0 165 89.7
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 6.1e-75 285.0 163 89.6
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 2.3e-74 283.1 163 88.3
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 6.8e-74 281.6 162 90.7
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 2.0e-73 280.0 164 88.4
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 5.7e-73 278.5 165 88.5
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 5.7e-73 278.5 165 88.5
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 5.7e-73 278.5 163 88.3
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 9.8e-73 277.7 164 90.2
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 9.8e-73 277.7 163 87.7
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.3e-72 277.3 165 89.1
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.3e-72 277.3 163 87.1
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.9e-72 276.2 164 88.4
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 2.9e-72 276.2 163 89.6
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 2.9e-72 276.2 164 87.8
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 6.4e-72 275.0 151 94.0
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 6.4e-72 275.0 151 94.0
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 6.4e-72 275.0 151 94.0
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.4e-71 273.9 164 87.2
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.4e-71 273.9 289 78.2
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.8e-71 273.5 154 89.6
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 1.8e-71 273.5 300 74.3
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.4e-71 273.1 162 88.3
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 2.4e-71 273.1 162 87.7
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 2.4e-71 273.1 162 88.3
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 2.4e-71 273.1 162 87.7
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 2.4e-71 273.1 162 87.7
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.4e-71 273.1 150 94.0
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 2.4e-71 273.1 154 89.0
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 2.4e-71 273.1 163 85.9
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 2.4e-71 273.1 165 87.9
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 3.2e-71 272.7 152 91.4
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 3.2e-71 272.7 152 91.4
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 4.1e-71 272.3 157 87.3
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 5.4e-71 271.9 151 92.7
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 5.4e-71 271.9 163 84.0
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 7.0e-71 271.6 151 92.7
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 7.0e-71 271.6 150 93.3
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 7.0e-71 271.6 163 87.7
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 7.0e-71 271.6 165 87.3
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 7.0e-71 271.6 165 87.3
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 9.2e-71 271.2 164 88.4
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.2e-70 270.8 169 85.2
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 1.6e-70 270.4 159 88.7
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 1.6e-70 270.4 159 88.7
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.6e-70 270.4 163 87.1
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 2.7e-70 269.6 162 87.0
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 2.7e-70 269.6 168 83.9
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 2.7e-70 269.6 152 90.8
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 2.7e-70 269.6 164 87.2
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 4.6e-70 268.9 162 87.0
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 7.8e-70 268.1 292 64.4
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.0e-69 267.7 153 90.8
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.0e-69 267.7 151 90.7
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 1.0e-69 267.7 299 64.2
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.3e-69 267.3 291 70.8
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.3e-69 267.3 164 84.1
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.7e-69 266.9 164 85.4
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.7e-69 266.9 168 82.1
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 2.3e-69 266.5 168 82.1
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.9e-69 266.2 165 86.1
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.9e-69 266.2 164 83.5
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.9e-69 265.8 156 85.9
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 5.0e-69 265.4 164 85.4
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 5.0e-69 265.4 152 93.4
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 5.0e-69 265.4 152 93.4
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 5.0e-69 265.4 292 65.4
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 5.0e-69 265.4 162 86.4
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 5.0e-69 265.4 162 86.4
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 5.0e-69 265.4 165 85.5
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 8.6e-69 264.6 290 70.7
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.1e-68 264.2 160 87.5
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.9e-68 263.5 164 84.1
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.9e-68 263.5 147 91.2
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.5e-68 263.1 286 65.7
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.5e-68 263.1 164 86.6
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 3.3e-68 262.7 163 85.3
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.3e-68 262.7 163 85.3
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 3.3e-68 262.7 164 81.7
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 4.3e-68 262.3 156 87.2
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.3e-68 262.3 163 84.7
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.3e-68 262.3 163 84.7
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 7.3e-68 261.5 152 90.1
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.2e-67 260.8 153 89.5
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.2e-67 260.8 163 83.4
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 2.1e-67 260.0 145 91.7
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.8e-67 259.6 165 83.0
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 2.8e-67 259.6 152 88.8
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.6e-67 259.2 163 83.4
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 6.2e-67 258.5 147 92.5
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.0e-66 257.7 166 83.1
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 1.8e-66 256.9 163 82.2
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.8e-66 256.9 151 88.7
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.3e-66 256.5 151 87.4
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 4.0e-66 255.8 167 80.8
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 5.2e-66 255.4 148 87.8
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.8e-66 255.0 159 83.6
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 8.9e-66 254.6 163 83.4
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.2e-65 254.2 152 86.8
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 2.0e-65 253.4 163 82.2
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 7.5e-65 251.5 152 84.9
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 3.7e-64 249.2 163 81.0
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 6.4e-64 248.4 163 81.0
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 1.1e-63 247.7 163 80.4
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.4e-63 247.3 153 83.7
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.4e-63 247.3 153 83.7
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.4e-63 247.3 154 83.1
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.4e-63 247.3 154 83.1
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.4e-63 247.3 154 83.1
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 7.0e-63 245.0 153 82.4
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.7e-62 243.0 151 84.1
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 1.7e-61 240.4 151 84.1
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.7e-61 240.4 162 77.8
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 5.0e-61 238.8 156 81.4
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 8.6e-61 238.0 149 83.9
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 5.6e-60 235.3 144 85.4
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 7.3e-60 235.0 164 75.6
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.2e-59 234.2 130 90.8
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 2.8e-59 233.0 141 85.8
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 5.2e-58 228.8 142 83.8
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.5e-57 227.3 159 77.4
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 9.8e-57 224.6 149 79.9
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 9.2e-55 218.0 163 73.6
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 9.2e-55 218.0 163 73.6
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.6e-54 217.2 162 69.8
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.3e-53 214.2 140 80.7
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.3e-53 214.2 123 87.8
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.7e-53 213.8 136 80.1
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 8.1e-51 204.9 132 82.6
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 3.1e-50 203.0 132 81.8
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 4.4e-49 199.1 163 68.1
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.2e-48 196.8 171 66.1
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 7.1e-47 191.8 160 63.1
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 9.2e-47 191.4 164 65.2
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 3.0e-45 186.4 109 88.1
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 8.6e-45 184.9 152 67.1
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 2.8e-43 179.9 124 76.6
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 4.7e-43 179.1 163 62.0
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 3.9e-37 159.5 94 87.2
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.9e-36 157.1 109 76.1
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 5.6e-36 155.6 94 83.0
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.2e-30 137.9 162 50.6
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.2e-30 137.9 162 50.6
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.2e-30 137.9 162 50.6
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.7e-30 136.7 162 50.6
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 2.8e-27 126.7 138 53.6
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.3e-20 102.8 141 47.5
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 4.0e-18 96.3 53 86.8
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 7.9e-14 82.0 58 75.9
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 3.0e-13 80.1 40 97.5
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.9e-13 79.7 50 76.0
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 8.7e-13 78.6 76 61.8
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 2.1e-06 57.4 67 53.7


User provided reference genes

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