Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 1.6e-80 302.8 156 100.0
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 5.7e-14 81.6 56 75.0
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 2.2e-13 79.7 56 75.0
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 2.2e-13 79.7 56 75.0
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 2.2e-13 79.7 56 75.0
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 3.7e-13 79.0 56 73.2
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 1.2e-11 73.9 56 62.5
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 2.0e-11 73.2 56 64.3
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 2.6e-11 72.8 56 60.7
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 2.6e-11 72.8 56 60.7
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 3.5e-11 72.4 56 64.3
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 3.5e-11 72.4 56 64.3
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 4.5e-11 72.0 56 60.7
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 4.5e-11 72.0 56 60.7
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 5.9e-11 71.6 56 64.3
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 5.9e-11 71.6 56 64.3
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 5.9e-11 71.6 56 60.7
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 5.9e-11 71.6 56 62.5
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 7.7e-11 71.2 56 62.5
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 7.7e-11 71.2 56 58.9
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 1.0e-10 70.9 56 58.9
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 1.0e-10 70.9 56 62.5
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 1.3e-10 70.5 56 62.5
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 1.3e-10 70.5 56 57.1
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 1.3e-10 70.5 56 58.9
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 1.3e-10 70.5 56 64.3
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 1.3e-10 70.5 56 58.9
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 1.7e-10 70.1 56 57.1
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 1.7e-10 70.1 56 62.5
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 1.7e-10 70.1 56 62.5
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 2.2e-10 69.7 56 60.7
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 2.2e-10 69.7 56 58.9
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 2.2e-10 69.7 56 58.9
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 2.2e-10 69.7 56 60.7
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 2.2e-10 69.7 55 60.0
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 2.9e-10 69.3 56 58.9
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 2.9e-10 69.3 56 57.1
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 2.9e-10 69.3 56 55.4
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 2.9e-10 69.3 56 60.7
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 2.9e-10 69.3 56 58.9
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 3.8e-10 68.9 56 58.9
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 3.8e-10 68.9 56 58.9
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 3.8e-10 68.9 56 58.9
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 5.0e-10 68.6 56 60.7
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 5.0e-10 68.6 56 60.7
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 5.0e-10 68.6 56 55.4
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 6.5e-10 68.2 56 58.9
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 6.5e-10 68.2 56 58.9
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 8.5e-10 67.8 56 58.9
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 8.5e-10 67.8 56 58.9
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 8.5e-10 67.8 56 60.7
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 8.5e-10 67.8 56 55.4
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 8.5e-10 67.8 56 53.6
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 8.5e-10 67.8 56 57.1
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 8.5e-10 67.8 56 57.1
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 8.5e-10 67.8 56 57.1
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 8.5e-10 67.8 56 58.9
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 1.1e-09 67.4 56 58.9
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 1.5e-09 67.0 56 53.6
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.5e-09 67.0 56 58.9
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.5e-09 67.0 56 58.9
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 1.5e-09 67.0 56 58.9
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 1.5e-09 67.0 55 60.0
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 1.5e-09 67.0 56 58.9
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 1.5e-09 67.0 56 55.4
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 1.9e-09 66.6 56 57.1
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 1.9e-09 66.6 56 58.9
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 2.5e-09 66.2 75 50.7
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 2.5e-09 66.2 56 53.6
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 2.5e-09 66.2 56 53.6
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 2.5e-09 66.2 56 55.4
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 2.5e-09 66.2 56 53.6
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 3.2e-09 65.9 56 57.1
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 3.2e-09 65.9 56 57.1
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 3.2e-09 65.9 56 55.4
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 3.2e-09 65.9 56 55.4
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 4.2e-09 65.5 56 51.8
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 4.2e-09 65.5 51 60.8
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 4.2e-09 65.5 56 55.4
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 5.5e-09 65.1 56 55.4
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 7.2e-09 64.7 56 51.8
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 7.2e-09 64.7 56 50.0
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 7.2e-09 64.7 56 55.4
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 9.4e-09 64.3 56 53.6
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 9.4e-09 64.3 50 60.0
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 1.2e-08 63.9 56 53.6
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 1.6e-08 63.5 56 57.1
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 2.7e-08 62.8 56 53.6
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 2.7e-08 62.8 56 53.6
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 3.6e-08 62.4 56 53.6
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.4e-07 60.5 56 53.6
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 5.2e-07 58.5 56 50.0
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 6.7e-07 58.2 56 48.2
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.5e-06 57.0 56 48.2
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.5e-06 57.0 46 69.6
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 1.5e-06 57.0 77 45.5
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.5e-06 57.0 46 69.6
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 2.0e-06 56.6 49 57.1
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 3.3e-06 55.8 49 55.1
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 5.7e-06 55.1 46 67.4
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 7.5e-06 54.7 56 42.9
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 9.7e-06 54.3 56 44.6


User provided reference genes

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