Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1197.6 607 100.0
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 1.8e-257 892.5 833 61.8
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 1.2e-256 889.8 833 61.6
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 2.0e-256 889.0 832 61.5
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 1.3e-255 886.3 833 61.3
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 1.3e-255 886.3 833 61.3
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 3.8e-255 884.8 833 61.2
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 1.4e-254 882.9 833 60.7
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 2.7e-253 878.6 833 60.6
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 3.5e-253 878.2 833 60.6
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 3.0e-252 875.2 821 62.0
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 1.6e-250 869.4 833 60.0
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 2.9e-247 858.6 880 57.3
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 3.9e-236 821.6 847 56.7
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 2.0e-219 766.1 847 52.3
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 2.4e-193 679.5 848 46.6
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 5.9e-192 674.9 852 46.7
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 5.9e-192 674.9 852 46.7
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 1.3e-191 673.7 852 46.6
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 5.0e-191 671.8 847 46.4
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 8.6e-191 671.0 844 46.6
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 2.5e-190 669.5 849 46.3
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 3.3e-190 669.1 844 46.4
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 7.2e-190 667.9 832 46.5
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 6.1e-189 664.8 856 45.9
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 1.0e-188 664.1 849 45.8
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 1.8e-188 663.3 857 45.9
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 1.2e-187 660.6 840 45.5
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 4.4e-187 658.7 845 45.3
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 9.8e-187 657.5 878 44.8
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.7e-186 656.8 863 44.8
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 3.1e-185 652.5 854 45.4
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 7.0e-185 651.4 847 45.9
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 7.0e-185 651.4 847 45.9
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 9.2e-185 651.0 849 46.1
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 9.2e-185 651.0 846 45.3
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 4.5e-184 648.7 847 45.8
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 7.8e-184 647.9 846 45.0
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.7e-183 646.7 839 44.7
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 5.0e-183 645.2 837 44.7
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 8.6e-183 644.4 848 44.9
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 1.1e-182 644.0 849 45.6
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 1.5e-182 643.7 847 44.5
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 2.5e-182 642.9 846 44.0
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 4.3e-182 642.1 845 45.2
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 9.5e-182 641.0 846 44.6
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 1.6e-181 640.2 848 44.6
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 2.8e-181 639.4 848 44.3
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 4.7e-181 638.6 849 44.6
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 1.4e-180 637.1 849 44.2
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 5.2e-180 635.2 847 44.2
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 4.4e-179 632.1 848 43.6
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 1.1e-177 627.5 840 44.4
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 1.9e-177 626.7 837 43.8
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 2.4e-177 626.3 847 43.9
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 2.4e-177 626.3 846 43.6
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 4.1e-177 625.5 847 43.6
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 5.4e-177 625.2 846 43.5
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 5.4e-177 625.2 848 43.6
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 1.7e-175 620.2 850 43.4
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 1.9e-174 616.7 844 43.7
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 2.5e-174 616.3 814 45.3
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 4.3e-174 615.5 841 43.8
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 4.3e-174 615.5 847 43.3
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 2.1e-173 613.2 847 43.3
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 2.3e-172 609.8 870 42.8
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 1.2e-171 607.4 834 44.0
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 1.5e-171 607.1 912 41.3
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 2.0e-171 606.7 862 42.3
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 4.9e-170 602.1 849 42.9
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 1.1e-169 600.9 847 42.5
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 1.9e-169 600.1 842 42.4
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 2.4e-169 599.7 848 42.7
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 2.1e-168 596.7 835 42.5
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 2.7e-168 596.3 841 43.2
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 3.5e-168 595.9 842 42.2
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 1.7e-167 593.6 825 43.3
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 1.5e-166 590.5 843 42.3
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 7.3e-166 588.2 839 42.0
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 1.2e-165 587.4 844 41.8
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 1.2e-165 587.4 843 42.1
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 1.2e-163 580.9 788 44.8
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 2.4e-161 573.2 845 41.8
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 3.2e-161 572.8 990 37.8
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 3.2e-161 572.8 855 39.9
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 5.4e-161 572.0 812 43.0
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 6.0e-160 568.5 891 39.8
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.2e-157 560.8 856 41.1
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 2.4e-156 556.6 838 40.5
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 2.2e-154 550.1 918 38.7
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 7.1e-153 545.0 861 41.1
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 2.1e-152 543.5 852 39.8
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 2.3e-151 540.0 786 42.5
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 1.0e-143 514.6 701 44.8
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 4.6e-136 489.2 442 64.3
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 5.3e-124 449.1 863 34.5
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 5.8e-123 445.7 858 33.9
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.1e-121 441.4 856 33.8
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 7.9e-120 435.3 938 33.7
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 3.4e-115 419.9 790 36.5
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 3.8e-114 416.4 694 38.9
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 3.8e-106 389.8 488 47.1
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 2.0e-102 377.5 427 46.1
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.9e-98 363.6 457 46.8
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 7.2e-97 359.0 843 29.4
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 9.4e-97 358.6 491 44.2
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 6.7e-95 352.4 484 45.2
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 2.6e-94 350.5 543 40.7
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 2.2e-90 337.4 487 42.7
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 8.5e-90 335.5 226 70.4
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.4e-84 317.4 226 68.6
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 3.6e-80 303.5 939 26.9
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 9.8e-78 295.4 229 62.9
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 3.1e-76 290.4 442 41.4
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 1.2e-75 288.5 456 41.2
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 3.0e-71 273.9 800 28.4
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 8.1e-56 222.6 361 39.9
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 2.6e-54 217.6 334 46.4
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 5.1e-42 176.8 93 83.9
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 9.9e-38 162.5 84 95.2
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.9e-34 150.6 124 57.3
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 1.5e-30 138.7 97 67.0
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 1.0e-26 125.9 114 55.3
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 4.8e-24 117.1 116 48.3
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 9.9e-22 109.4 429 22.6
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 3.2e-20 104.4 495 19.4
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 6.2e-16 90.1 66 60.6
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 4.0e-15 87.4 84 51.2
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 3.2e-12 77.8 96 38.5
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 5.5e-12 77.0 128 37.5
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 9.3e-12 76.3 515 19.8
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 4.6e-11 73.9 89 44.9
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.0e-05 56.2 56 46.4


User provided reference genes

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