Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 7.2e-78 293.9 153 100.0
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 6.1e-77 290.8 153 98.0
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 2.0e-43 179.5 133 73.7
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 2.6e-43 179.1 133 73.7
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 3.4e-43 178.7 133 74.4
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 5.7e-43 177.9 133 73.7
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 5.7e-43 177.9 133 73.7
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 2.8e-42 175.6 133 70.7
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 8.3e-42 174.1 133 72.9
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 8.3e-42 174.1 133 72.9
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 8.3e-42 174.1 133 72.9
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 8.3e-42 174.1 133 72.9
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 1.1e-41 173.7 133 71.4
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 2.4e-41 172.6 133 72.2
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 2.4e-41 172.6 133 70.7
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 2.4e-41 172.6 133 71.4
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 3.1e-41 172.2 133 72.2
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 5.9e-40 167.9 133 68.4
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 1.0e-39 167.2 133 68.4
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.7e-39 166.4 133 69.2
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 2.9e-39 165.6 133 68.4
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 2.9e-39 165.6 133 68.4
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 3.8e-39 165.2 133 68.4
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 5.0e-39 164.9 133 67.7
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 6.6e-39 164.5 130 69.2
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 6.6e-39 164.5 133 67.7
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.9e-38 162.9 133 66.9
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 1.9e-38 162.9 133 66.9
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.5e-38 162.5 133 66.2
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 2.5e-38 162.5 133 66.2
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 2.5e-38 162.5 133 66.2
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 2.5e-38 162.5 133 65.4
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 3.3e-38 162.2 133 66.9
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 3.3e-38 162.2 133 64.7
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 3.3e-38 162.2 133 65.4
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 3.3e-38 162.2 133 66.2
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 4.3e-38 161.8 133 66.2
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 4.3e-38 161.8 133 66.2
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 4.3e-38 161.8 133 66.2
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 4.3e-38 161.8 133 65.4
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 5.6e-38 161.4 133 65.4
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 5.6e-38 161.4 130 68.5
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 5.6e-38 161.4 133 66.9
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 5.6e-38 161.4 133 66.9
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 9.5e-38 160.6 133 66.2
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 9.5e-38 160.6 133 64.7
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.2e-37 160.2 133 65.4
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 1.2e-37 160.2 133 66.9
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 1.6e-37 159.8 133 65.4
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.6e-37 159.8 133 66.9
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.6e-37 159.8 133 67.7
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 2.1e-37 159.5 133 65.4
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 2.8e-37 159.1 133 64.7
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 2.8e-37 159.1 133 64.7
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 3.6e-37 158.7 133 66.2
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 3.6e-37 158.7 133 64.7
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 3.6e-37 158.7 133 65.4
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 4.7e-37 158.3 133 64.7
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 4.7e-37 158.3 130 66.9
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 4.7e-37 158.3 133 66.2
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 6.1e-37 157.9 133 65.4
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 6.1e-37 157.9 133 66.2
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 8.0e-37 157.5 133 65.4
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 8.0e-37 157.5 133 65.4
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 1.0e-36 157.1 133 64.7
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 1.0e-36 157.1 133 65.4
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 1.4e-36 156.8 133 66.2
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 1.8e-36 156.4 133 64.7
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.8e-36 156.4 133 63.9
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 2.3e-36 156.0 133 64.7
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 3.0e-36 155.6 133 63.9
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 4.0e-36 155.2 133 63.9
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 6.8e-36 154.5 141 62.4
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 8.9e-36 154.1 133 63.2
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 8.9e-36 154.1 136 62.5
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 8.9e-36 154.1 136 62.5
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 8.9e-36 154.1 144 61.1
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 2.0e-35 152.9 133 63.9
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 2.0e-35 152.9 133 63.2
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 2.6e-35 152.5 133 63.9
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 3.4e-35 152.1 132 62.9
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 3.4e-35 152.1 133 61.7
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 3.4e-35 152.1 133 63.9
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 3.4e-35 152.1 133 64.7
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 4.4e-35 151.8 133 62.4
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 5.7e-35 151.4 133 63.2
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 5.7e-35 151.4 133 63.2
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 5.7e-35 151.4 133 63.2
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 5.7e-35 151.4 141 61.7
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 7.5e-35 151.0 133 63.2
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.5e-35 151.0 136 61.8
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 9.8e-35 150.6 133 63.9
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 1.3e-34 150.2 133 63.9
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 6.4e-34 147.9 105 71.4
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 1.1e-33 147.1 133 60.2
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.1e-33 147.1 133 60.2
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 1.1e-33 147.1 133 61.7
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 1.4e-33 146.7 133 62.4
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 1.4e-33 146.7 134 63.4
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.8e-33 146.4 133 60.9
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 1.8e-33 146.4 133 61.7
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 2.4e-33 146.0 130 61.5
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.2e-33 145.6 93 77.4
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 3.2e-33 145.6 133 60.2
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 3.2e-33 145.6 133 60.2
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 4.1e-33 145.2 133 60.2
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 7.0e-33 144.4 133 62.4
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 9.2e-33 144.1 133 59.4
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-32 143.3 133 58.6
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 2.7e-32 142.5 133 58.6
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 4.6e-32 141.7 132 59.1
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 7.8e-32 141.0 133 58.6
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 7.8e-32 141.0 133 56.4
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 1.0e-31 140.6 133 59.4
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 1.3e-31 140.2 133 57.1
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 1.3e-31 140.2 133 58.6
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 1.7e-31 139.8 133 57.9
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 2.3e-31 139.4 133 58.6
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 2.3e-31 139.4 133 58.6
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.9e-31 138.7 130 59.2
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 3.9e-31 138.7 132 56.1
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 1.9e-30 136.3 133 57.1
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.9e-30 136.3 132 57.6
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.6e-29 133.3 130 59.2
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 1.0e-28 130.6 125 60.0
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 3.1e-28 129.0 106 66.0
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 3.7e-26 122.1 93 64.5
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 1.0e-23 114.0 133 51.1
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 1.1e-22 110.5 133 49.6
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 7.3e-22 107.8 133 51.1
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.5e-19 100.1 130 45.4
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 1.5e-19 100.1 105 48.6
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 6.4e-18 94.7 127 44.1
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 1.9e-17 93.2 63 77.8
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 6.0e-16 88.2 130 36.2
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 6.0e-16 88.2 133 38.3
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 7.3e-14 81.3 93 41.9
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 3.2e-09 65.9 41 73.2


User provided reference genes

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