Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 4.4e-55 217.6 103 100.0
BcaC05g28511 Brassica carinata HOM05D002849 ORTHO05D024297 5.4e-29 131.0 59 100.0
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 5.4e-29 131.0 59 100.0
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 5.8e-23 110.9 93 62.4
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 7.6e-23 110.5 93 62.4
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 7.6e-23 110.5 93 62.4
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 2.2e-22 109.0 93 62.4
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 8.4e-22 107.1 93 60.2
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 8.4e-22 107.1 93 60.2
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.0e-19 100.1 93 62.4
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 1.3e-19 99.8 93 61.3
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 3.0e-19 98.6 93 59.1
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 8.7e-19 97.1 93 58.1
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 5.6e-18 94.4 93 58.1
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 7.3e-18 94.0 93 57.0
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 1.3e-17 93.2 94 57.4
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 1.3e-17 93.2 93 54.8
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 2.1e-17 92.4 93 60.2
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 3.6e-17 91.7 93 55.9
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 1.1e-16 90.1 95 57.9
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 1.1e-16 90.1 95 57.9
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 2.4e-16 89.0 95 56.8
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 1.2e-15 86.7 97 53.6
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 2.0e-15 85.9 93 53.8
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 5.8e-15 84.3 93 52.7
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 1.7e-14 82.8 94 50.0
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 1.7e-14 82.8 93 53.8
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 3.8e-14 81.6 93 51.6
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 6.4e-14 80.9 93 50.5
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 6.4e-14 80.9 93 50.5
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 8.4e-14 80.5 93 52.7
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 8.4e-14 80.5 93 51.6
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.1e-13 80.1 93 52.7
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 1.4e-13 79.7 93 50.5
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 1.4e-13 79.7 93 51.6
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 2.4e-13 79.0 93 49.5
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 3.2e-13 78.6 93 49.5
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 4.2e-13 78.2 93 50.5
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 4.2e-13 78.2 82 50.0
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 5.4e-13 77.8 82 51.2
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 5.4e-13 77.8 93 48.4
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 5.4e-13 77.8 93 49.5
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 5.4e-13 77.8 93 49.5
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 7.1e-13 77.4 93 49.5
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 9.3e-13 77.0 93 49.5
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 9.3e-13 77.0 92 47.8
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 1.2e-12 76.6 98 44.9
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 1.2e-12 76.6 93 49.5
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.6e-12 76.3 93 48.4
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.6e-12 76.3 93 48.4
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.6e-12 76.3 93 48.4
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 2.1e-12 75.9 96 46.9
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 2.1e-12 75.9 93 49.5
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 2.7e-12 75.5 92 47.8
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 2.7e-12 75.5 83 51.8
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 2.7e-12 75.5 93 47.3
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 3.5e-12 75.1 93 48.4
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 3.5e-12 75.1 83 49.4
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 4.6e-12 74.7 93 51.6
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 4.6e-12 74.7 93 51.6
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 6.0e-12 74.3 93 47.3
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 6.0e-12 74.3 77 50.6
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 6.0e-12 74.3 83 48.2
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 7.8e-12 73.9 81 50.6
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 7.8e-12 73.9 93 47.3
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 7.8e-12 73.9 80 51.2
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 1.0e-11 73.6 93 49.5
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.0e-11 73.6 93 47.3
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 1.0e-11 73.6 93 47.3
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 1.0e-11 73.6 83 51.8
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 1.3e-11 73.2 95 46.3
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 1.3e-11 73.2 83 48.2
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 1.3e-11 73.2 93 46.2
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 1.3e-11 73.2 81 48.1
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 1.3e-11 73.2 75 53.3
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 1.7e-11 72.8 93 49.5
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 1.7e-11 72.8 81 49.4
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 1.7e-11 72.8 80 50.0
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 2.3e-11 72.4 80 51.2
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 2.3e-11 72.4 93 47.3
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 2.3e-11 72.4 93 46.2
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 3.0e-11 72.0 76 52.6
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 3.0e-11 72.0 76 52.6
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 3.0e-11 72.0 76 52.6
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 3.0e-11 72.0 76 52.6
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 3.9e-11 71.6 78 51.3
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 5.1e-11 71.2 94 43.6
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 6.6e-11 70.9 93 43.0
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 8.7e-11 70.5 93 46.2
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 8.7e-11 70.5 93 46.2
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 1.1e-10 70.1 71 52.1
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 1.1e-10 70.1 71 52.1
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.5e-10 69.7 76 51.3
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 1.5e-10 69.7 71 52.1
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 1.9e-10 69.3 82 47.6
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 3.3e-10 68.6 79 48.1
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 4.3e-10 68.2 94 43.6
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 4.3e-10 68.2 93 44.1
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 5.6e-10 67.8 93 45.2
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 5.6e-10 67.8 71 52.1
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 7.3e-10 67.4 68 52.9
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 7.3e-10 67.4 70 51.4
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 7.3e-10 67.4 71 52.1
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 1.3e-09 66.6 76 48.7
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 4.0e-08 61.6 89 44.9
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 2.6e-07 58.9 70 47.1
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 3.4e-07 58.5 74 44.6
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 3.4e-07 58.5 27 88.9
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 5.8e-07 57.8 71 46.5
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 1.3e-06 56.6 91 38.5
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 4.9e-06 54.7 74 43.2
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 8.4e-06 53.9 84 38.1


User provided reference genes

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