Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 5.5e-147 524.2 260 100.0
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 4.7e-122 441.4 224 96.9
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 5.4e-118 427.9 224 93.8
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.1e-115 420.2 225 93.3
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.1e-115 420.2 225 93.3
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 5.2e-113 411.4 222 90.1
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 6.0e-109 397.9 224 86.2
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.7e-108 396.4 218 88.1
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 9.6e-107 390.6 217 88.0
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 9.6e-107 390.6 217 88.0
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 1.6e-106 389.8 218 87.2
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.7e-106 388.3 222 85.1
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 8.1e-106 387.5 218 85.8
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.2e-103 379.4 205 89.8
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 5.4e-102 374.8 222 83.8
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 7.6e-88 327.8 218 74.8
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 3.3e-83 312.4 206 69.9
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 8.2e-82 307.8 207 72.0
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.8e-81 306.6 207 72.0
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 4.5e-80 302.0 214 68.7
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.0e-79 300.8 201 69.2
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.9e-78 296.6 211 68.2
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 2.6e-72 276.2 206 64.6
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 3.6e-69 265.8 208 62.0
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.0e-68 264.2 137 92.0
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.1e-67 260.8 209 61.2
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 1.5e-67 260.4 210 61.0
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 7.4e-67 258.1 210 60.5
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.1e-65 254.2 210 60.5
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 4.1e-65 252.3 209 60.3
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 4.1e-65 252.3 211 57.3
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 6.9e-65 251.5 208 59.6
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.2e-64 250.8 212 58.5
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.2e-64 250.8 211 58.3
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.0e-63 247.7 210 58.1
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.0e-63 247.7 210 59.5
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.9e-63 246.1 210 58.6
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.8e-63 245.7 213 57.3
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 5.0e-63 245.4 210 57.1
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 5.0e-63 245.4 211 56.9
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 6.5e-63 245.0 209 57.9
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 6.5e-63 245.0 209 58.9
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.1e-62 244.2 211 57.8
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 2.5e-62 243.0 209 57.4
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 3.2e-62 242.7 209 57.4
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 3.2e-62 242.7 210 56.2
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 4.2e-62 242.3 210 56.7
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 5.5e-62 241.9 212 54.7
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 7.2e-62 241.5 207 57.5
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 9.4e-62 241.1 215 56.3
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 9.4e-62 241.1 210 59.0
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 2.7e-61 239.6 208 57.7
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 6.1e-61 238.4 209 58.9
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 7.9e-61 238.0 210 58.6
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.4e-60 237.3 210 56.2
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 3.0e-60 236.1 212 53.3
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 3.9e-60 235.7 209 55.5
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 3.9e-60 235.7 209 56.9
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.7e-60 235.0 214 54.2
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 8.8e-60 234.6 221 55.7
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 1.5e-59 233.8 209 56.9
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.5e-59 233.8 212 54.2
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.0e-59 233.4 214 54.2
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.0e-59 233.4 209 56.0
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 3.3e-59 232.6 209 56.5
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 3.3e-59 232.6 209 55.5
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 3.3e-59 232.6 209 55.0
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 3.3e-59 232.6 211 54.0
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 7.4e-59 231.5 213 55.9
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.7e-58 230.3 209 53.6
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.8e-58 228.8 209 54.1
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.8e-58 228.8 207 57.0
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 4.8e-58 228.8 209 55.5
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 6.3e-58 228.4 209 54.1
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.3e-58 228.4 209 54.1
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 6.3e-58 228.4 211 54.5
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 8.2e-58 228.0 225 52.9
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.4e-57 227.3 212 51.9
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.4e-57 227.3 209 53.6
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 1.4e-57 227.3 211 54.0
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.4e-57 227.3 224 54.0
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 2.4e-57 226.5 216 55.1
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 3.1e-57 226.1 208 54.3
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 5.3e-57 225.3 210 56.2
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 6.9e-57 224.9 208 54.8
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 6.9e-57 224.9 212 55.2
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.2e-56 224.2 209 53.1
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 1.2e-56 224.2 210 55.2
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.5e-56 223.8 211 55.0
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 2.0e-56 223.4 208 54.8
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 2.0e-56 223.4 211 55.5
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 5.9e-56 221.9 210 55.7
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 5.9e-56 221.9 217 54.4
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 7.7e-56 221.5 208 53.4
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 7.7e-56 221.5 209 52.6
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.7e-56 221.5 208 54.8
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.7e-56 221.5 208 54.8
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.0e-55 221.1 210 54.3
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.0e-55 221.1 210 54.3
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.0e-55 221.1 209 52.2
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 1.0e-55 221.1 210 52.9
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.9e-55 219.5 212 51.4
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.9e-55 219.5 212 51.4
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 3.8e-55 219.2 208 55.3
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 3.8e-55 219.2 212 52.4
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 3.8e-55 219.2 209 54.1
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.8e-55 219.2 212 54.7
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.0e-55 218.8 212 50.5
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.1e-54 217.6 210 54.3
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 1.1e-54 217.6 212 52.8
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 1.4e-54 217.2 208 52.4
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 3.2e-54 216.1 218 52.8
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 4.2e-54 215.7 207 51.2
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.2e-54 215.7 212 50.5
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 5.5e-54 215.3 207 53.6
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 7.2e-54 214.9 209 51.7
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 9.4e-54 214.5 209 51.2
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 2.7e-53 213.0 209 51.2
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 4.7e-53 212.2 218 50.5
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 6.1e-53 211.8 207 49.3
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.3e-52 209.9 176 56.2
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 3.0e-52 209.5 207 53.1
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 3.0e-52 209.5 205 48.8
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.8e-52 208.0 177 56.5
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.0e-51 206.8 212 50.0
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 4.4e-51 205.7 218 47.2
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 7.4e-51 204.9 212 50.5
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 9.7e-51 204.5 223 48.4
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 9.7e-51 204.5 223 48.4
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 3.7e-50 202.6 209 51.7
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 6.3e-50 201.8 211 49.3
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.2e-50 201.4 214 49.5
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.8e-49 200.3 218 46.3
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.1e-49 199.5 190 53.2
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 3.1e-49 199.5 210 51.4
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 9.1e-49 198.0 190 51.6
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 1.6e-48 197.2 211 46.4
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 5.0e-47 192.2 230 44.8
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.1e-46 191.0 225 48.4
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.1e-46 191.0 204 47.5
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 4.2e-46 189.1 206 48.1
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 5.5e-46 188.7 225 47.6
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 5.5e-46 188.7 196 49.5
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 3.6e-45 186.0 176 52.3
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 8.0e-45 184.9 197 50.8
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 1.0e-44 184.5 207 46.4
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.2e-44 182.2 167 56.9
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 2.6e-43 179.9 218 47.2
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 4.4e-43 179.1 216 47.7
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.2e-42 176.8 204 47.5
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 6.3e-42 175.3 169 53.8
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 8.2e-42 174.9 224 45.5
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.8e-41 173.7 212 46.2
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 2.4e-41 173.3 117 68.4
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 7.7e-40 168.3 230 40.0
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 2.5e-38 163.3 207 43.5
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 5.5e-38 162.2 127 61.4
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 4.7e-37 159.1 142 52.8
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 1.0e-36 157.9 230 37.0
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.8e-36 157.1 210 43.3
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.0e-35 153.7 187 43.9
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.5e-35 151.8 135 55.6
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.1e-33 147.9 151 51.7
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.1e-30 137.9 90 72.2
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.2e-29 134.4 99 64.6
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 1.2e-29 134.4 168 44.0
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 8.0e-29 131.7 118 56.8
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.5e-27 127.5 96 66.7
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 4.3e-22 109.4 62 91.9
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 5.6e-22 109.0 125 48.0
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 2.8e-21 106.7 167 39.5
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 1.2e-19 101.3 72 69.4
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 7.5e-19 98.6 77 54.5
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.4e-17 94.4 53 86.8
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 1.8e-17 94.0 191 30.4
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 4.3e-14 82.8 134 37.3
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 2.1e-13 80.5 107 39.3
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.6e-13 79.7 76 48.7
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.7e-10 70.9 90 34.4
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 4.1e-09 66.2 65 47.7
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 7.0e-09 65.5 175 27.4
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 4.6e-08 62.8 48 58.3
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 3.0e-07 60.1 82 39.0


User provided reference genes

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