Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraSC179t45793Z Brassica rapa HOM05D000216 ORTHO05D000634 3.4e-36 154.5 77 100.0
Gohir.A11G180662 Gossypium hirsutum HOM05D000216 ORTHO05D000634 6.3e-22 107.1 67 85.1
C02p28760 Brassica napus HOM05D000216 ORTHO05D000634 4.5e-20 100.9 52 98.1
AL2G20940 Arabidopsis lyrata HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
ATCG00180 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
BcaC03g15274 Brassica carinata HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
BcaC05g28801 Brassica carinata HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
BNapus_Darmor_BZH_scaffold_253p00070 Brassica napus HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
BolSC37t60766H Brassica oleracea HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
BolSC45t60875H Brassica oleracea HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
BraSC140t45607Z Brassica rapa HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
BraSC151t45702Z Brassica rapa HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
BraSC58t46478Z Brassica rapa HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
CAN.G219.18 Capsicum annuum HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
CARHR281930 Cardamine hirsuta HOM05D000216 ORTHO05D001131 2.1e-17 92.0 45 100.0
Migut.D01343 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
Gohir.D07G215250 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
Gorai.005G167800 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
Hma1.2p1_0094F.1_g047102 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
PSO548G0054 Papaver somniferum HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
Potri.013G140850 Populus trichocarpa HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
PGR111G0082 Punica granatum HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 2.1e-17 92.0 45 100.0
SHI35296 Sapria himalayana HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
PGSC0003DMG402029613 Solanum tuberosum HOM05D000216 ORTHO05D000634 2.1e-17 92.0 45 100.0
DCAR_032475 Daucus carota HOM05D000216 ORTHO05D000634 2.7e-17 91.7 45 97.8
LjContig00489g0016986 Lotus japonicus HOM05D000216 ORTHO05D000634 4.6e-17 90.9 45 97.8
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 6.1e-17 90.5 45 97.8
EL10Ac9g21013 Beta vulgaris HOM05D000216 ORTHO05D000634 6.1e-17 90.5 45 97.8
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 6.1e-17 90.5 45 97.8
AUR62024083 Chenopodium quinoa HOM05D000216 ORTHO05D001131 6.1e-17 90.5 45 97.8
unitig_91.g26497 Utricularia gibba HOM05D000216 ORTHO05D000634 7.9e-17 90.1 45 97.8
ATR0187G002 Amborella trichopoda HOM05D000216 ORTHO05D000634 1.0e-16 89.7 45 97.8
Ca_05612_v3 Cicer arietinum L. HOM05D000216 ORTHO05D000634 1.0e-16 89.7 45 97.8
CsaV3_UNG208340 Cucumis sativus L. HOM05D000216 ORTHO05D001131 1.0e-16 89.7 45 97.8
LjContig00318g0019842 Lotus japonicus HOM05D000216 ORTHO05D000634 1.0e-16 89.7 45 97.8
Lalb_Chr09g0335381 Lupinus albus HOM05D000216 ORTHO05D000634 1.0e-16 89.7 45 97.8
Lalb_Chr24g0400941 Lupinus albus HOM05D000216 ORTHO05D000634 1.0e-16 89.7 45 97.8
Medtr3g062770 Medicago truncatula HOM05D000216 ORTHO05D000634 1.0e-16 89.7 45 97.8
Medtr3g062790 Medicago truncatula HOM05D000216 ORTHO05D000634 1.0e-16 89.7 45 97.8
Medtr4g051130 Medicago truncatula HOM05D000216 ORTHO05D001131 1.0e-16 89.7 45 97.8
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 1.0e-16 89.7 45 97.8
Sed0020606 Sechium edule HOM05D000216 ORTHO05D000634 1.0e-16 89.7 45 97.8
Sed0024913 Sechium edule HOM05D000216 ORTHO05D000634 1.0e-16 89.7 45 97.8
Sed0025165 Sechium edule HOM05D000216 ORTHO05D000634 1.0e-16 89.7 45 97.8
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 1.0e-16 89.7 45 97.8
BraSC58t46407Z Brassica rapa HOM05D000216 ORTHO05D000634 1.8e-16 89.0 43 100.0
COL.COLO4_37398 Corchorus olitorius HOM05D000216 ORTHO05D000634 3.0e-16 88.2 45 95.6
arahy.Tifrunner.gnm1.ann1.YJD706 Arachis hypogaea HOM05D000216 ORTHO05D000634 5.1e-16 87.4 45 95.6
Gohir.D06G063650 Gossypium hirsutum HOM05D000216 ORTHO05D000634 5.1e-16 87.4 45 95.6
Gorai.010G074300 Gossypium raimondii HOM05D000216 ORTHO05D000634 5.1e-16 87.4 45 95.6
Medtr3g047940 Medicago truncatula HOM05D000216 ORTHO05D000634 1.1e-15 86.3 45 93.3
FAN07G2613 Fragaria x ananassa HOM05D000216 ORTHO05D000634 4.3e-15 84.3 44 95.5
Gorai.004G245000 Gossypium raimondii HOM05D000216 ORTHO05D000634 4.3e-15 84.3 44 93.2
CAN.G1185.16 Capsicum annuum HOM05D000216 ORTHO05D000634 5.7e-15 84.0 41 100.0
CAN.G939.15 Capsicum annuum HOM05D000216 ORTHO05D000634 5.7e-15 84.0 41 100.0
Oeu012776.1 Olea europaea HOM05D000216 ORTHO05D000634 5.7e-15 84.0 45 91.1
Potri.019G028000 Populus trichocarpa HOM05D000216 ORTHO05D000634 5.7e-15 84.0 41 100.0
Solyc08g028950.3 Solanum lycopersicum HOM05D000216 ORTHO05D000634 9.7e-15 83.2 45 91.1
Psat0s6357g0040 Pisum sativum HOM05D000216 ORTHO05D001131 1.6e-14 82.4 45 91.1
Psat7g026760 Pisum sativum HOM05D000216 ORTHO05D000634 1.6e-14 82.4 45 91.1
BraSC151t45696Z Brassica rapa HOM05D000216 ORTHO05D000634 4.8e-14 80.9 39 100.0
Psat6g181520 Pisum sativum HOM05D000216 ORTHO05D000634 4.8e-14 80.9 45 88.9
Psat0s4841g0120 Pisum sativum HOM05D000216 ORTHO05D000634 1.4e-13 79.3 45 86.7
Phvul.010G131000 Phaseolus vulgaris HOM05D000216 ORTHO05D000634 1.8e-13 79.0 41 92.7
QL93p1429_0001 Quercus lobata HOM05D000216 ORTHO05D000634 1.8e-13 79.0 52 78.8
Lj2A1227T105 Lonicera japonica HOM05D000216 ORTHO05D000634 2.4e-13 78.6 43 88.4
Lj2A1237T129 Lonicera japonica HOM05D000216 ORTHO05D000634 2.4e-13 78.6 43 88.4
Lj2C1224G59 Lonicera japonica HOM05D000216 ORTHO05D000634 2.4e-13 78.6 43 88.4
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 2.4e-13 78.6 43 88.4
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 2.4e-13 78.6 43 88.4
Lj2C1239T55 Lonicera japonica HOM05D000216 ORTHO05D000634 2.4e-13 78.6 43 88.4
Nitab4.5_0000172g0310 Nicotiana tabacum HOM05D000216 ORTHO05D000634 2.4e-13 78.6 41 92.7
arahy.Tifrunner.gnm1.ann1.CSY78X Arachis hypogaea HOM05D000216 ORTHO05D000634 3.1e-13 78.2 45 86.7
Oeu012803.1 Olea europaea HOM05D000216 ORTHO05D000634 3.1e-13 78.2 41 92.7
Psat7g064880 Pisum sativum HOM05D000216 ORTHO05D000634 5.3e-13 77.4 45 86.7
Hma1.2p1_2065F.1_g313040 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 6.9e-13 77.0 41 92.7
Medtr4g009210 Medicago truncatula HOM05D000216 ORTHO05D000634 6.9e-13 77.0 45 84.4
Medtr8g016510 Medicago truncatula HOM05D000216 ORTHO05D000634 6.9e-13 77.0 39 97.4
CAN.G131.7 Capsicum annuum HOM05D000216 ORTHO05D000634 1.5e-12 75.9 41 92.7
Lju2566C0G7 Lonicera japonica HOM05D000216 ORTHO05D000634 1.5e-12 75.9 43 86.0
Psat5g263640 Pisum sativum HOM05D000216 ORTHO05D000634 2.0e-12 75.5 45 84.4
Lalb_Chr06g0173131 Lupinus albus HOM05D000216 ORTHO05D000634 1.0e-11 73.2 45 84.4
Lalb_Chr06g0173041 Lupinus albus HOM05D000216 ORTHO05D000634 2.2e-11 72.0 44 84.1
HanXRQChr13g0417241 Helianthus annuus HOM05D000216 ORTHO05D001131 8.5e-11 70.1 43 74.4
ECA054G0005 Erigeron canadensis HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 74.4
ECA169G0008 Erigeron canadensis HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 74.4
HanXRQChr00c0823g0577611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 74.4
HanXRQChr00c0994g0578181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 74.4
HanXRQChr07g0188331 Helianthus annuus HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 74.4
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 74.4
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 74.4
HanXRQChr15g0488301 Helianthus annuus HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 74.4
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 1.4e-10 69.3 43 74.4
Lsat_1_v5_gn_1_96161 Lactuca sativa HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 74.4
Lsat_1_v5_gn_2_41761 Lactuca sativa HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 74.4
Lsat_1_v5_gn_6_87861 Lactuca sativa HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 74.4
Lsat_1_v5_gn_8_1820 Lactuca sativa HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 74.4
Lsat_1_v5_gn_8_77281 Lactuca sativa HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 74.4
Hund12598 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.5e-10 68.6 66 57.6
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 5.5e-10 67.4 41 82.9
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 2.7e-09 65.1 45 71.1
Migut.D01416 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.3e-08 62.0 32 90.6
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 5.1e-08 60.8 47 63.8


User provided reference genes

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