Gene: ATCG00180

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier ATCG00180
  • Transcript Identifier ATCG00180.1
  • Gene Type Coding gene
  • Location ChrC : 20251-23084 : negative

Gene Family Information

  • ID HOM05D000216
  • #Genes/#Species 1874/88
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid ATCG00180.1
  • symbol RPOC1
  • uniprot P56763

Descriptions

  • Description DNA-directed RNA polymerase family protein
  • Computational description RPOC1; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: RNA elongation; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
GOA Databasetranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0006354
TAS
Gene OntologyDNA-templated transcription, elongation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003899
IEA
GOA DatabaseDNA-directed 5'-3' RNA polymerase activity
GO:0003899
IBA
TAS
Gene OntologyDNA-directed 5'-3' RNA polymerase activity1
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0000287
IEA
GOA Databasemagnesium ion binding
GO:0003729
IDA
Gene OntologymRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
TAS
Gene Ontologychloroplast3 4
GO:0042644
IDA
GOA Databasechloroplast nucleoid
GO:0042644
HDA
Gene Ontologychloroplast nucleoid5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007080 RNA polymerase Rpb1, domain 1
IPR044893 RNA polymerase Rpb1, clamp domain superfamily
IPR042102 RNA polymerase Rpb1, domain 3 superfamily
IPR000722 RNA polymerase, alpha subunit
IPR006592 RNA polymerase, N-terminal
Mapman id Description
15.6.1.2.1.3 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components.core component RpoC1