Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 1.4e-207 726.1 366 100.0
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 9.1e-204 713.4 366 98.1
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 1.2e-203 713.0 366 97.8
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 1.2e-203 713.0 366 97.8
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 4.5e-203 711.1 366 97.8
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 1.7e-194 682.6 366 94.3
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 1.8e-191 672.5 366 91.5
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 7.5e-190 667.2 366 91.8
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 8.2e-189 663.7 366 91.3
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 1.2e-187 659.8 366 91.0
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 1.2e-187 659.8 366 91.0
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 2.0e-187 659.1 371 88.9
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 1.0e-186 656.8 372 88.2
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 1.5e-185 652.9 371 88.4
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 4.7e-184 647.9 371 87.6
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.8e-167 592.8 384 79.7
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 5.6e-161 571.2 366 78.1
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 9.5e-161 570.5 377 76.7
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 2.3e-159 565.8 366 76.5
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 3.2e-156 555.4 366 75.4
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 5.4e-156 554.7 371 75.7
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 9.2e-156 553.9 372 75.8
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 1.2e-155 553.5 366 75.4
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 7.8e-155 550.8 371 74.9
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 1.3e-154 550.1 372 75.5
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 2.3e-154 549.3 366 75.7
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 3.0e-154 548.9 367 74.9
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 8.6e-154 547.4 366 74.6
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 8.6e-154 547.4 367 75.5
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.9e-153 546.2 366 75.4
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 1.9e-153 546.2 366 74.3
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 7.3e-153 544.3 370 74.1
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 1.6e-152 543.1 366 73.5
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 3.6e-152 542.0 367 72.5
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 6.2e-152 541.2 366 72.7
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.1e-151 540.4 366 73.5
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.8e-151 539.7 367 72.2
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 1.8e-151 539.7 379 71.5
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 3.1e-151 538.9 366 72.1
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 5.2e-151 538.1 379 72.0
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 6.8e-151 537.7 367 74.7
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 2.6e-150 535.8 376 73.4
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 3.4e-150 535.4 366 73.0
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 9.8e-150 533.9 375 72.8
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 1.7e-149 533.1 368 72.0
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 2.9e-149 532.3 366 74.0
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 2.9e-149 532.3 366 72.7
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 2.9e-149 532.3 366 74.6
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 3.7e-149 531.9 368 72.0
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 4.9e-149 531.6 380 70.8
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 6.4e-149 531.2 381 70.1
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 6.4e-149 531.2 379 70.7
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 2.4e-148 529.3 366 71.6
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 3.5e-147 525.4 366 71.6
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 6.0e-147 524.6 367 72.5
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 7.8e-147 524.2 375 72.0
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.3e-146 523.5 367 73.0
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 1.7e-146 523.1 379 69.1
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 2.3e-146 522.7 381 70.3
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 3.0e-146 522.3 367 71.1
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.0e-146 522.3 362 72.7
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 3.0e-146 522.3 367 73.0
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 5.1e-146 521.5 366 71.9
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 5.1e-146 521.5 379 68.9
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 8.6e-146 520.8 366 71.0
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 4.3e-145 518.5 366 71.6
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 7.3e-145 517.7 368 69.6
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 1.6e-144 516.5 381 68.2
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 1.1e-143 513.8 379 69.4
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 2.3e-143 512.7 366 71.9
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 3.1e-143 512.3 368 69.6
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 1.2e-142 510.4 368 69.6
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 3.4e-142 508.8 366 70.8
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 3.4e-142 508.8 375 67.7
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 3.4e-142 508.8 398 66.6
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 3.7e-141 505.4 382 66.0
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 4.1e-140 501.9 365 69.3
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 9.2e-140 500.7 378 66.9
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 2.7e-139 499.2 382 65.4
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 2.3e-138 496.1 366 68.9
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 6.6e-138 494.6 367 69.5
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 1.9e-137 493.0 365 66.6
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 2.5e-137 492.7 358 68.7
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 2.5e-137 492.7 365 66.6
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.8e-136 489.2 378 65.6
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 6.2e-136 488.0 367 68.9
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 2.6e-134 482.6 368 66.6
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 5.8e-134 481.5 367 65.9
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 9.9e-134 480.7 367 67.0
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 2.2e-133 479.6 368 65.8
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 2.2e-133 479.6 367 65.9
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 6.4e-133 478.0 367 67.3
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 1.9e-132 476.5 368 66.3
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 4.2e-132 475.3 368 66.3
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 5.4e-132 474.9 367 65.7
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 7.1e-132 474.6 369 65.0
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 9.3e-132 474.2 368 66.3
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.2e-131 473.8 319 74.6
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.0e-130 470.7 362 66.0
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 2.3e-130 469.5 368 64.1
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 2.3e-130 469.5 368 65.5
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 3.9e-130 468.8 368 64.1
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 5.1e-130 468.4 368 65.5
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 1.8e-127 459.9 367 64.6
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 3.1e-127 459.1 369 62.6
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 9.0e-127 457.6 314 74.2
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 3.2e-124 449.1 367 64.0
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 1.6e-123 446.8 369 65.0
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 4.3e-121 438.7 366 60.9
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 2.8e-120 436.0 341 63.9
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 6.2e-120 434.9 387 59.9
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 1.8e-119 433.3 354 64.7
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 4.2e-116 422.2 387 54.3
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 1.8e-114 416.8 296 72.0
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 5.1e-114 415.2 359 60.2
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 5.1e-114 415.2 320 67.8
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.6e-112 410.2 319 67.1
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.1e-111 407.5 369 56.6
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 4.3e-105 385.6 371 57.1
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 1.3e-101 374.0 365 54.2
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 3.2e-100 369.4 297 62.6
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.3e-98 364.0 277 66.1
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 8.7e-98 361.3 309 59.5
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.9e-83 311.6 189 84.1
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 3.5e-70 269.6 162 84.0
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 2.9e-69 266.5 277 49.8
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 7.2e-68 261.9 380 39.7
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 4.7e-67 259.2 161 78.3
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 9.1e-63 245.0 258 52.7
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 4.2e-60 236.1 327 45.0
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 2.8e-59 233.4 243 51.9
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 4.0e-58 229.6 331 37.2
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 2.2e-56 223.8 159 71.7
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.8e-56 223.4 159 73.0
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.6e-51 206.5 167 65.3
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 5.2e-50 202.6 181 54.1
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.3e-48 198.0 167 63.5
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 7.0e-47 192.2 228 46.1
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 7.3e-44 182.2 118 81.4
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 7.5e-41 172.2 133 72.2
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 1.7e-40 171.0 133 71.4
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 7.1e-31 139.0 100 64.0
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 2.1e-30 137.5 81 85.2
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 4.6e-30 136.3 100 76.0
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.3e-29 134.0 121 60.3
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 4.9e-24 116.3 198 38.4
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.0e-21 108.6 83 65.1
A07p02870 Brassica napus HOM05D012141 ORTHO05D013118 7.3e-20 102.4 67 82.1
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.4e-15 88.2 51 86.3
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.4e-15 88.2 51 86.3


User provided reference genes

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