Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29598H Brassica oleracea HOM05D000904 ORTHO05D033438 5.4e-181 637.5 313 100.0
C05p08480 Brassica napus HOM05D000904 ORTHO05D033438 1.9e-165 585.9 323 92.0
BcaNung05228 Brassica carinata HOM05D000904 ORTHO05D006931 1.3e-41 174.5 278 45.0
BcaC05g24900 Brassica carinata HOM05D000904 ORTHO05D006931 2.2e-41 173.7 273 45.4
A08p34030 Brassica napus HOM05D000904 ORTHO05D006931 8.4e-41 171.8 281 44.5
BraA08t35316Z Brassica rapa HOM05D000904 ORTHO05D005281 8.4e-41 171.8 281 44.5
BcaNung05166 Brassica carinata HOM05D000904 ORTHO05D006931 1.9e-40 170.6 278 44.6
C08p13580 Brassica napus HOM05D000904 ORTHO05D006931 1.9e-40 170.6 278 44.6
BolC8t48998H Brassica oleracea HOM05D000904 ORTHO05D005281 1.9e-40 170.6 278 44.6
A06p06970 Brassica napus HOM05D000904 ORTHO05D006931 3.5e-39 166.4 269 45.0
Thhalv10009354m.g Eutrema salsugineum HOM05D000904 ORTHO05D006931 4.3e-37 159.5 255 45.1
AT1G10320 Arabidopsis thaliana HOM05D000904 ORTHO05D006931 7.4e-37 158.7 278 43.5
Aa31LG1G4600 Aethionema arabicum HOM05D000904 ORTHO05D006931 9.6e-37 158.3 274 42.3
Sp1g08920 Schrenkiella parvula HOM05D000904 ORTHO05D006931 6.2e-36 155.6 278 39.9
AL1G21050 Arabidopsis lyrata HOM05D000904 ORTHO05D006931 1.1e-35 154.8 277 42.6
THA.LOC104810192 Tarenaya hassleriana HOM05D000904 ORTHO05D006931 2.5e-29 133.7 262 40.1
Cpa.g.sc173.41 Carica papaya HOM05D000904 ORTHO05D006931 4.6e-23 112.8 277 35.0
MELO3C016469.2 Cucumis melo HOM05D000904 ORTHO05D006931 4.6e-23 112.8 264 36.0
CARHR010450 Cardamine hirsuta HOM05D000904 ORTHO05D006931 7.9e-23 112.1 216 41.7
Glyma.08G162800 Glycine max HOM05D000904 ORTHO05D006931 1.5e-21 107.8 278 32.7
TPR.G2096 Trifolium pratense HOM05D000904 ORTHO05D006931 1.5e-21 107.8 263 35.0
Lj5g0025119 Lotus japonicus HOM05D000904 ORTHO05D006931 2.5e-21 107.1 278 33.1
Atru.chr3.2070 Acer truncatum HOM05D000904 ORTHO05D006931 3.3e-21 106.7 266 33.1
Cfa004448 Carpinus fangiana HOM05D000904 ORTHO05D006931 3.3e-21 106.7 265 35.5
Ciclev10024033m.g Citrus clementina HOM05D000904 ORTHO05D006931 3.3e-21 106.7 289 33.2
COL.COLO4_22855 Corchorus olitorius HOM05D000904 ORTHO05D006931 4.3e-21 106.3 261 34.1
GSVIVG01023150001 Vitis vinifera HOM05D000904 ORTHO05D006931 4.3e-21 106.3 271 34.3
AUR62021311 Chenopodium quinoa HOM05D000904 ORTHO05D006931 1.6e-20 104.4 166 39.2
Ciclev10003415m.g Citrus clementina HOM05D000904 ORTHO05D006931 1.6e-20 104.4 274 33.9
CsaV3_3G006640 Cucumis sativus L. HOM05D000904 ORTHO05D006931 1.6e-20 104.4 282 32.6
QL02p103277 Quercus lobata HOM05D000904 ORTHO05D006931 1.6e-20 104.4 310 33.9
Hund00892 Selenicereus undatus HOM05D000904 ORTHO05D006931 1.6e-20 104.4 175 37.7
arahy.Tifrunner.gnm1.ann1.V0D4VX Arachis hypogaea HOM05D000904 ORTHO05D006931 2.2e-20 104.0 278 32.7
Haze_09988 Corylus avellana HOM05D000904 ORTHO05D006931 2.8e-20 103.6 265 34.3
MBI19_g32709_MAGBIO Magnolia biondii HOM05D000904 ORTHO05D006931 3.7e-20 103.2 166 41.0
TWI59G0191 Tripterygium wilfordii HOM05D000904 ORTHO05D006931 3.7e-20 103.2 262 34.0
Phvul.006G221300 Phaseolus vulgaris HOM05D000904 ORTHO05D006931 4.8e-20 102.8 278 33.1
Oeu043612.1 Olea europaea HOM05D000904 ORTHO05D006931 6.3e-20 102.4 268 34.3
Solyc01g103090.4 Solanum lycopersicum HOM05D000904 ORTHO05D006931 6.3e-20 102.4 259 33.6
ATR1089G094 Amborella trichopoda HOM05D000904 ORTHO05D006931 8.2e-20 102.1 166 39.8
Duzib160G0493 Durio zibethinus HOM05D000904 ORTHO05D006931 8.2e-20 102.1 283 33.6
TAR628G1213 Trochodendron aralioides HOM05D000904 ORTHO05D006931 8.2e-20 102.1 276 33.7
Medtr2g005450 Medicago truncatula HOM05D000904 ORTHO05D006931 1.4e-19 101.3 278 32.4
SGA_v2.0_scaffold131G34405 Striga asiatica HOM05D000904 ORTHO05D006931 1.4e-19 101.3 285 33.0
AUR62043443 Chenopodium quinoa HOM05D000904 ORTHO05D006931 1.8e-19 100.9 166 38.0
Potri.004G228600 Populus trichocarpa HOM05D000904 ORTHO05D006931 1.8e-19 100.9 166 39.2
PGR042G3242 Punica granatum HOM05D000904 ORTHO05D006931 1.8e-19 100.9 166 40.4
vmacro19831 Vaccinium macrocarpon HOM05D000904 ORTHO05D006931 1.8e-19 100.9 256 32.0
Aqoxy6G00043 Aquilegia oxysepala HOM05D000904 ORTHO05D006931 2.4e-19 100.5 166 39.2
arahy.Tifrunner.gnm1.ann1.7BJ6UQ Arachis hypogaea HOM05D000904 ORTHO05D006931 2.4e-19 100.5 301 30.9
Nitab4.5_0004668g0060 Nicotiana tabacum HOM05D000904 ORTHO05D006931 2.4e-19 100.5 258 34.1
CANSAT01G3012 Cannabis sativa HOM05D000904 ORTHO05D006931 3.1e-19 100.1 273 32.6
PGSC0003DMG400020705 Solanum tuberosum HOM05D000904 ORTHO05D006931 3.1e-19 100.1 259 33.6
arahy.Tifrunner.gnm1.ann1.AE80VE Arachis hypogaea HOM05D000904 ORTHO05D006931 4.1e-19 99.8 302 30.8
Dinv29628 Davidia involucrata HOM05D000904 ORTHO05D006931 4.1e-19 99.8 287 33.8
Migut.B00725 Erythranthe guttata HOM05D000904 ORTHO05D006931 4.1e-19 99.8 261 31.8
VMungo0540G1910 Vigna mungo HOM05D000904 ORTHO05D006931 4.1e-19 99.8 285 32.6
Ca_00027_v3 Cicer arietinum L. HOM05D000904 ORTHO05D006931 6.9e-19 99.0 269 33.1
Nn5g27250 Nelumbo nucifera HOM05D000904 ORTHO05D006931 6.9e-19 99.0 274 33.2
Atru.chr6.324 Acer truncatum HOM05D000904 ORTHO05D006931 9.0e-19 98.6 276 32.2
Prupe.1G585000 Prunus persica HOM05D000904 ORTHO05D006931 1.2e-18 98.2 255 33.7
FvH4_5g28020 Fragaria vesca HOM05D000904 ORTHO05D006931 2.0e-18 97.4 259 31.3
Psat1g223160 Pisum sativum HOM05D000904 ORTHO05D006931 2.0e-18 97.4 284 32.4
Sc06g0007800 Simmondsia chinensis HOM05D000904 ORTHO05D006931 2.0e-18 97.4 257 31.1
FAN18G0255 Fragaria x ananassa HOM05D000904 ORTHO05D006931 2.6e-18 97.1 259 31.3
Lsat_1_v5_gn_9_121820 Lactuca sativa HOM05D000904 ORTHO05D006931 2.6e-18 97.1 166 38.6
PSO421G0485 Papaver somniferum HOM05D000904 ORTHO05D006931 2.6e-18 97.1 257 33.1
HPP92_011434 Vanilla planifolia HOM05D000904 ORTHO05D006931 2.6e-18 97.1 166 40.4
Zm00001eb243910 Zea mays HOM05D000904 ORTHO05D006931 2.6e-18 97.1 166 42.2
CSS0030434 Camellia sinensis var. sinensis HOM05D000904 ORTHO05D006931 3.4e-18 96.7 258 33.3
Cc02_g23540 Coffea canephora HOM05D000904 ORTHO05D006931 3.4e-18 96.7 285 33.0
Nitab4.5_0008306g0010 Nicotiana tabacum HOM05D000904 ORTHO05D006931 3.4e-18 96.7 277 32.1
Peaxi162Scf00011g01832 Petunia axillaris HOM05D000904 ORTHO05D006931 4.5e-18 96.3 273 30.8
CAN.G855.47 Capsicum annuum HOM05D000904 ORTHO05D006931 7.7e-18 95.5 258 32.9
Eucgr.G00080 Eucalyptus grandis HOM05D000904 ORTHO05D006931 7.7e-18 95.5 276 31.5
DCAR_001720 Daucus carota HOM05D000904 ORTHO05D006931 1.0e-17 95.1 258 31.8
CiPaw.05G001900 Carya illinoinensis HOM05D000904 ORTHO05D006931 1.3e-17 94.7 266 33.5
Glyma.15G244700 Glycine max HOM05D000904 ORTHO05D006931 1.3e-17 94.7 256 31.6
PSO063G1559 Papaver somniferum HOM05D000904 ORTHO05D006931 1.7e-17 94.4 262 34.0
AUR62033228 Chenopodium quinoa HOM05D000904 ORTHO05D006931 2.9e-17 93.6 88 53.4
Actinidia26193 Actinidia chinensis HOM05D000904 ORTHO05D006931 8.5e-17 92.0 279 30.5
HanXRQChr12g0381671 Helianthus annuus HOM05D000904 ORTHO05D006931 1.4e-16 91.3 204 34.3
CARHR070930 Cardamine hirsuta HOM05D000904 ORTHO05D033438 1.9e-16 90.9 99 52.5
CDE05G0469 Ceratophyllum demersum HOM05D000904 ORTHO05D006931 2.5e-16 90.5 88 52.3
Manes.10G111800 Manihot esculenta HOM05D000904 ORTHO05D006931 2.5e-16 90.5 277 32.9
unitig_578.g15961 Utricularia gibba HOM05D000904 ORTHO05D006931 3.2e-16 90.1 88 50.0
SEGI_25881 Sequoiadendron giganteum HOM05D000904 ORTHO05D006931 1.2e-15 88.2 211 33.2
Mapoly0079s0042 Marchantia polymorpha HOM05D000904 ORTHO05D006931 2.7e-15 87.0 166 35.5
FAN08G0588 Fragaria x ananassa HOM05D000904 ORTHO05D006931 4.6e-15 86.3 87 50.6
SMO364G0945 Selaginella moellendorffii HOM05D000904 ORTHO05D006931 3.9e-14 83.2 88 48.9
MD05G1262900 Malus domestica HOM05D000904 ORTHO05D006931 1.1e-11 75.1 104 42.3
BcaNung05168 Brassica carinata HOM05D000904 ORTHO05D006931 2.4e-11 73.9 36 91.7
Carub.0001s0974 Capsella rubella HOM05D000904 ORTHO05D006931 6.9e-11 72.4 63 60.3
Lj5A282T77 Lonicera japonica HOM05D000904 ORTHO05D006931 9.1e-11 72.0 66 54.5
Actinidia01633 Actinidia chinensis HOM05D000904 ORTHO05D006931 1.2e-10 71.6 36 86.1
Thecc.06G017100 Theobroma cacao HOM05D000904 ORTHO05D006931 1.5e-10 71.2 36 83.3
Pp3c3_25240 Physcomitrium patens HOM05D000904 ORTHO05D006931 2.0e-10 70.9 167 32.9
Carub.0001s0973 Capsella rubella HOM05D000904 ORTHO05D006931 4.5e-10 69.7 66 66.7
Sopen01g045510 Solanum pennellii HOM05D000904 ORTHO05D006931 1.3e-09 68.2 36 83.3
Rhsim05G0115600 Rhododendron simsii HOM05D000904 ORTHO05D006931 1.7e-09 67.8 36 77.8
RcHm_v2.0_Chr6g0272511 Rosa chinensis HOM05D000904 ORTHO05D006931 1.7e-09 67.8 36 77.8
ClCG10G007450 Citrullus lanatus HOM05D000904 ORTHO05D006931 2.9e-09 67.0 87 46.0
CARHR009050 Cardamine hirsuta HOM05D000904 ORTHO05D006931 3.8e-09 66.6 30 83.3
Gohir.D02G105600 Gossypium hirsutum HOM05D000904 ORTHO05D006931 5.0e-09 66.2 36 80.6
Ciclev10030365m.g Citrus clementina HOM05D000904 ORTHO05D006931 1.1e-08 65.1 35 77.1
ECA240G4044 Erigeron canadensis HOM05D000904 ORTHO05D006931 1.4e-08 64.7 36 75.0
Gorai.005G120000 Gossypium raimondii HOM05D000904 ORTHO05D006931 1.4e-08 64.7 35 80.0
MD15G1442200 Malus domestica HOM05D000904 ORTHO05D006931 3.2e-08 63.5 38 73.7
HPP92_011425 Vanilla planifolia HOM05D000904 ORTHO05D006931 3.2e-08 63.5 36 77.8
Lalb_Chr20g0123821 Lupinus albus HOM05D000904 ORTHO05D006931 2.1e-07 60.8 202 30.2
Ciclev10010745m.g Citrus clementina HOM05D000904 ORTHO05D006931 4.7e-07 59.7 49 59.2
RcHm_v2.0_Chr7g0221391 Rosa chinensis HOM05D000904 ORTHO05D006931 6.1e-07 59.3 195 29.7
Duzib235G0267 Durio zibethinus HOM05D000734 ORTHO05D002090 8.8e-06 55.5 71 45.1


User provided reference genes

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