Gene: Sopen01g045510

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g045510
  • Transcript Identifier Sopen01g045510.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 102278070-102280318 : negative

Gene Family Information

  • ID HOM05D000904
  • #Genes/#Species 662/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g045510.1

Descriptions

  • Description Zinc finger C-x8-C-x5-C-x3-H type family protein | FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , RNA recognition, domain 1 , U2 auxiliary factor small subunit | BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor small subunit, putative
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003676
ISO
PLAZA Homology (enrichment)nucleic acid binding HOM05D000904

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0089701
IEA
InterProU2AF complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009145 U2 auxiliary factor small subunit
IPR000571 Zinc finger, CCCH-type
Mapman id Description
35.1 not assigned.annotated