Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 4.3e-99 365.2 258 100.0
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 7.3e-91 337.8 190 94.2
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 7.3e-91 337.8 190 94.2
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 8.1e-90 334.3 190 93.7
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 2.3e-89 332.8 204 86.3
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 3.7e-87 325.5 190 91.6
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 3.7e-87 325.5 190 91.6
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 2.4e-86 322.8 176 93.8
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 3.9e-84 315.5 183 90.2
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 4.3e-83 312.0 170 92.9
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 4.7e-82 308.5 193 86.5
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 8.1e-82 307.8 183 88.5
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 2.9e-79 299.3 199 81.9
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 2.9e-79 299.3 199 81.9
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.1e-78 297.4 180 87.2
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.5e-77 292.4 180 87.2
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.6e-74 283.5 181 84.0
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 2.8e-74 282.7 151 96.0
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 4.8e-74 282.0 192 80.2
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 6.2e-74 281.6 174 86.8
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 8.1e-74 281.2 192 80.2
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 8.1e-74 281.2 212 75.0
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 1.4e-73 280.4 203 77.3
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.4e-73 280.4 210 74.3
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 2.4e-73 279.6 193 81.3
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 3.1e-73 279.3 151 94.0
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 9.0e-73 277.7 189 81.5
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 5.8e-72 275.0 196 78.6
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.2e-71 273.1 197 77.2
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 4.9e-71 271.9 197 76.1
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 6.4e-71 271.6 222 70.3
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.9e-70 270.0 203 74.4
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 2.4e-70 269.6 216 70.4
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 3.2e-70 269.2 191 79.1
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 4.2e-70 268.9 163 87.7
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 5.4e-70 268.5 188 79.8
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.4e-70 268.5 215 73.5
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 5.4e-70 268.5 203 74.4
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 5.4e-70 268.5 205 75.1
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 7.1e-70 268.1 152 88.8
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 7.1e-70 268.1 162 86.4
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 7.1e-70 268.1 199 75.4
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 9.3e-70 267.7 222 69.4
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 9.3e-70 267.7 152 88.2
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 9.3e-70 267.7 202 76.7
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.2e-69 267.3 162 87.0
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 1.2e-69 267.3 222 69.8
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.2e-69 267.3 214 72.4
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.2e-69 267.3 162 84.0
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.6e-69 266.9 164 86.0
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 1.6e-69 266.9 162 84.0
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 2.1e-69 266.5 152 90.1
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 2.1e-69 266.5 187 78.6
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 2.1e-69 266.5 187 78.6
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 2.7e-69 266.2 184 78.8
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.7e-69 266.2 182 79.7
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 4.6e-69 265.4 175 82.3
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 4.6e-69 265.4 205 73.2
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 6.0e-69 265.0 203 73.9
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 6.0e-69 265.0 197 77.7
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.0e-68 264.2 212 71.2
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.0e-68 264.2 195 75.4
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.7e-68 263.5 199 73.4
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.7e-68 263.5 193 78.2
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.7e-68 263.5 203 72.4
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 2.3e-68 263.1 162 84.0
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.3e-68 263.1 152 87.5
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.0e-68 262.7 228 67.5
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 3.0e-68 262.7 156 87.8
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 3.9e-68 262.3 192 76.6
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 3.9e-68 262.3 212 71.2
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 3.9e-68 262.3 145 93.1
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 8.7e-68 261.2 193 74.6
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.5e-67 260.4 176 79.5
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.9e-67 260.0 199 73.4
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.5e-67 259.6 167 83.2
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 3.3e-67 259.2 222 69.8
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 3.3e-67 259.2 222 69.8
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.3e-67 259.2 158 86.1
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 3.3e-67 259.2 158 86.1
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 5.6e-67 258.5 163 83.4
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 5.6e-67 258.5 187 74.9
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 5.6e-67 258.5 221 69.7
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 5.6e-67 258.5 166 83.1
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 7.3e-67 258.1 167 82.6
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 9.6e-67 257.7 185 78.9
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 9.6e-67 257.7 185 77.3
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.3e-66 257.3 177 80.8
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.3e-66 257.3 209 70.3
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.3e-66 257.3 220 70.0
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.3e-66 257.3 221 69.2
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.3e-66 257.3 157 86.0
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 2.1e-66 256.5 152 88.2
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 2.8e-66 256.1 193 76.7
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.8e-66 256.1 193 76.7
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 2.8e-66 256.1 211 70.1
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.6e-66 255.8 193 76.2
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.6e-66 255.8 193 76.2
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 6.2e-66 255.0 161 83.9
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 8.1e-66 254.6 196 73.0
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.1e-65 254.2 162 82.7
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.4e-65 253.8 186 74.7
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.8e-65 253.4 186 76.9
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 4.0e-65 252.3 220 70.5
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 4.0e-65 252.3 184 77.7
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 5.3e-65 251.9 151 87.4
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 6.9e-65 251.5 209 69.9
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 1.2e-64 250.8 164 82.3
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.0e-64 250.0 153 85.6
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.0e-64 250.0 153 85.6
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 2.6e-64 249.6 160 84.4
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 4.5e-64 248.8 151 86.1
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.5e-64 248.8 189 75.1
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 4.5e-64 248.8 165 80.6
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 4.5e-64 248.8 218 69.7
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 5.8e-64 248.4 220 70.0
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 5.8e-64 248.4 184 75.5
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 5.8e-64 248.4 152 84.9
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 7.6e-64 248.1 226 63.3
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.3e-63 247.3 139 91.4
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.7e-63 246.9 162 80.2
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 1.1e-62 244.2 164 79.3
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 3.2e-62 242.7 164 78.7
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 9.3e-62 241.1 149 85.9
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.2e-61 240.7 189 74.1
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.6e-61 240.4 153 81.7
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 2.1e-61 240.0 154 83.8
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.0e-60 237.7 134 91.8
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.8e-60 236.9 144 85.4
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.9e-59 233.4 174 75.9
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 3.3e-59 232.6 130 92.3
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 3.7e-58 229.2 142 83.1
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 2.4e-57 226.5 196 67.9
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 9.0e-57 224.6 207 66.2
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 9.0e-57 224.6 166 74.1
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.5e-56 223.8 202 67.3
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 6.5e-55 218.4 136 83.1
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.0e-52 211.1 198 61.6
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 5.7e-51 205.3 121 85.1
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 9.6e-51 204.5 191 63.9
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 9.6e-51 204.5 191 63.9
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.6e-48 196.4 169 66.9
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.3e-47 194.1 192 63.5
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 3.9e-44 182.6 156 62.8
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 6.7e-44 181.8 152 65.8
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 7.4e-43 178.3 198 57.6
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.4e-41 174.1 207 56.5
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 9.0e-41 171.4 124 74.2
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 6.5e-39 165.2 166 59.6
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 4.3e-35 152.5 94 81.9
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 2.2e-34 150.2 109 74.3
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 6.9e-33 145.2 192 53.1
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.2e-30 136.3 192 49.0
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.6e-29 134.0 184 49.5
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.6e-29 134.0 184 49.5
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.6e-29 134.0 168 51.2
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.4e-25 120.9 138 51.4
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 3.1e-25 119.8 82 80.5
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 3.2e-22 109.8 57 96.5
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 9.4e-22 108.2 196 43.4
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 4.4e-19 99.4 54 87.0
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 2.1e-13 80.5 40 97.5
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.6e-13 79.7 50 78.0
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 9.4e-06 55.1 67 52.2


User provided reference genes

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