Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 2.1e-258 895.2 450 100.0
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 1.7e-180 636.3 613 60.4
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 6.6e-180 634.4 613 60.0
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 6.6e-180 634.4 613 60.0
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 8.6e-180 634.0 613 59.9
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 1.1e-179 633.6 613 60.0
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 5.6e-179 631.3 613 59.9
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 4.0e-177 625.2 613 59.1
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 3.4e-176 622.1 613 59.4
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 6.4e-175 617.8 613 58.7
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 3.2e-174 615.5 613 58.7
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 2.8e-170 602.4 601 59.4
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 1.1e-169 600.5 660 54.7
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 3.4e-168 595.5 620 56.3
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 7.8e-157 557.8 614 52.4
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 4.5e-144 515.4 614 48.7
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 1.7e-143 513.5 615 47.6
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 4.2e-142 508.8 615 48.0
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 9.3e-142 507.7 615 47.3
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 2.7e-141 506.1 614 48.2
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 1.3e-140 503.8 614 47.4
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 8.7e-140 501.1 614 47.6
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.1e-139 500.7 602 47.8
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 1.5e-139 500.4 614 47.1
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 1.5e-139 500.4 614 47.1
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 4.3e-139 498.8 614 46.7
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 4.3e-139 498.8 626 46.2
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 5.6e-139 498.4 614 47.2
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 9.6e-139 497.7 653 45.9
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 3.7e-138 495.7 569 50.1
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 4.8e-138 495.4 626 46.3
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 1.1e-137 494.2 626 46.2
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 1.4e-137 493.8 635 46.3
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.8e-137 493.4 623 46.4
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 4.0e-137 492.3 442 64.3
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 4.0e-137 492.3 614 46.3
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 4.0e-137 492.3 614 46.3
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 2.6e-136 489.6 614 46.4
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 7.6e-136 488.0 613 46.5
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 1.3e-135 487.3 617 46.2
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 2.2e-135 486.5 615 46.2
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 3.8e-135 485.7 613 46.8
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 4.9e-135 485.3 648 44.8
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 1.1e-134 484.2 613 46.5
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 1.9e-134 483.4 392 71.7
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 7.1e-134 481.5 614 46.9
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 7.1e-134 481.5 614 45.3
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 2.7e-133 479.6 614 45.9
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 3.5e-133 479.2 621 45.7
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.0e-132 477.6 601 45.9
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 1.8e-132 476.9 614 46.3
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 5.1e-132 475.3 614 46.3
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 6.7e-132 474.9 614 45.9
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 3.3e-131 472.6 613 46.2
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 3.3e-131 472.6 613 46.0
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 5.6e-131 471.9 614 45.8
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 5.6e-131 471.9 614 45.4
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 2.8e-130 469.5 614 45.6
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 2.8e-130 469.5 614 45.3
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 3.7e-130 469.2 614 45.3
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 3.7e-130 469.2 613 45.4
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 8.2e-130 468.0 614 44.8
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 8.2e-130 468.0 614 45.3
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 3.1e-129 466.1 613 45.7
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 3.1e-129 466.1 610 45.7
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 4.0e-129 465.7 614 44.8
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 5.3e-129 465.3 605 46.1
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 3.4e-128 462.6 614 44.3
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 5.8e-128 461.8 613 44.9
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 3.8e-127 459.1 616 45.0
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 2.5e-126 456.4 614 43.5
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 2.5e-126 456.4 665 41.8
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 4.2e-126 455.7 601 44.9
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 7.1e-126 454.9 354 64.4
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 7.1e-126 454.9 687 40.8
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 1.2e-125 454.1 614 43.5
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 2.1e-125 453.4 614 44.5
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 7.9e-125 451.4 601 44.4
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 1.8e-124 450.3 612 44.1
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 3.9e-124 449.1 614 43.0
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 5.1e-124 448.7 354 65.0
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 1.3e-122 444.1 614 43.0
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 6.3e-122 441.8 613 43.4
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 1.2e-120 437.6 640 41.7
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 2.6e-120 436.4 614 43.5
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 7.7e-120 434.9 614 42.3
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 1.3e-119 434.1 628 41.4
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 3.8e-119 432.6 615 42.8
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 3.8e-119 432.6 611 44.2
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 3.8e-119 432.6 614 43.0
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 5.0e-119 432.2 354 62.7
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 6.5e-119 431.8 620 43.1
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 9.4e-118 427.9 611 43.7
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 1.2e-117 427.6 611 41.6
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 2.3e-116 423.3 347 62.5
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 1.1e-115 421.0 631 41.5
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 6.3e-114 415.2 668 39.1
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 1.2e-112 411.0 575 44.2
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 7.7e-112 408.3 758 36.1
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 3.2e-110 402.9 354 61.0
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 8.8e-108 394.8 354 57.6
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 2.2e-106 390.2 700 37.6
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 1.0e-103 381.3 354 55.6
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 5.0e-103 379.0 413 50.8
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 3.0e-100 369.8 354 55.1
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 9.7e-99 364.8 617 39.5
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.6e-96 357.5 355 54.9
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 1.0e-92 344.7 307 59.0
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.5e-91 340.9 626 35.0
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.0e-87 328.2 626 34.3
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 5.0e-87 325.9 618 34.6
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 1.1e-73 281.6 623 31.0
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 4.1e-65 253.1 309 46.6
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 7.5e-59 232.3 691 28.1
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 1.6e-53 214.5 344 38.7
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.7e-42 177.9 95 83.2
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 2.8e-29 134.0 317 28.7
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 3.2e-25 120.6 126 51.6
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 5.4e-25 119.8 126 50.8
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 5.3e-20 103.2 124 44.4
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 3.4e-19 100.5 205 31.2
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 4.2e-17 93.6 65 67.7
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 6.0e-16 89.7 42 88.1
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 6.9e-12 76.3 195 25.6
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 1.1e-09 68.9 89 36.0


User provided reference genes

Program Settings