Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18475 Brassica carinata HOM05D017680 ORTHO05D014392 3.3e-231 804.7 401 100.0
C02p08200 Brassica napus HOM05D017680 ORTHO05D014392 2.8e-230 801.6 401 99.8
BolC2t06744H Brassica oleracea HOM05D017680 ORTHO05D014392 4.5e-204 714.5 392 90.8
C02p08220 Brassica napus HOM05D017680 ORTHO05D014392 1.6e-198 696.0 401 87.0
BcaNung02227 Brassica carinata HOM05D017680 ORTHO05D014392 1.4e-101 374.0 345 62.0
BraA02t05315Z Brassica rapa HOM05D017680 ORTHO05D011193 7.9e-84 315.1 197 82.2
BcaC03g18483 Brassica carinata HOM05D001331 ORTHO05D001157 2.2e-78 297.0 348 52.6
AL3G36590 Arabidopsis lyrata HOM05D009193 ORTHO05D014392 3.3e-58 229.9 363 44.6
AL636U10010 Arabidopsis lyrata HOM05D009193 ORTHO05D014392 1.8e-43 181.0 343 38.2
AL5G28780 Arabidopsis lyrata HOM05D009193 ORTHO05D014392 1.5e-34 151.4 311 36.7
Thhalv10019612m.g Eutrema salsugineum HOM05D009193 ORTHO05D014392 2.6e-34 150.6 438 33.1
AL6G22980 Arabidopsis lyrata HOM05D009193 ORTHO05D014392 3.1e-32 143.7 361 35.2
BcaC01g01608 Brassica carinata HOM05D009193 ORTHO05D027771 8.6e-30 135.6 388 32.5
BolC3t19675H Brassica oleracea HOM05D009193 ORTHO05D027771 8.6e-30 135.6 385 32.5
AT3G49130 Arabidopsis thaliana HOM05D009193 ORTHO05D014392 3.0e-27 127.1 360 31.1
AT5G06520 Arabidopsis thaliana HOM05D002594 ORTHO05D019719 1.5e-26 124.8 190 40.5
AL6G16600 Arabidopsis lyrata HOM05D002594 ORTHO05D019719 5.4e-24 116.3 159 44.0
BcaB05g25049 Brassica carinata HOM05D009193 ORTHO05D014963 1.1e-21 108.6 313 29.7
C02p34850 Brassica napus HOM05D009193 ORTHO05D014963 5.6e-21 106.3 293 30.4
A09p52370 Brassica napus HOM05D009193 ORTHO05D014963 1.2e-20 105.1 294 30.3
BraA02t07150Z Brassica rapa HOM05D009193 ORTHO05D014963 1.6e-20 104.8 294 30.6
BraA09t40667Z Brassica rapa HOM05D009193 ORTHO05D014963 2.8e-20 104.0 294 29.9
AT2G43960 Arabidopsis thaliana HOM05D040433 ORTHO05D031328 3.6e-20 103.6 290 32.4
BolC2t09505H Brassica oleracea HOM05D009193 ORTHO05D014963 1.0e-19 102.1 291 29.6
BcaC03g15751 Brassica carinata HOM05D009193 ORTHO05D014963 1.8e-19 101.3 295 29.5
C03p74120 Brassica napus HOM05D009193 ORTHO05D027771 8.9e-19 99.0 304 32.2
BcaB05g25046 Brassica carinata HOM05D009193 ORTHO05D014963 1.5e-18 98.2 305 29.2
Carub.0001s3486 Capsella rubella HOM05D051559 ORTHO05D038665 9.2e-16 89.0 422 25.6
AL6G15580 Arabidopsis lyrata HOM05D011209 ORTHO05D011495 4.6e-15 86.7 145 40.7
Thhalv10015678m.g Eutrema salsugineum HOM05D009193 ORTHO05D014963 1.7e-14 84.7 126 43.7
BcaC03g18476 Brassica carinata HOM05D009193 ORTHO05D014392 1.9e-13 81.3 266 28.2
BcaC07g41292 Brassica carinata HOM05D011209 ORTHO05D011495 6.2e-12 76.3 124 36.3
C08p43010 Brassica napus HOM05D011209 ORTHO05D011495 6.2e-12 76.3 124 36.3
A09p59680 Brassica napus HOM05D011209 ORTHO05D011495 8.0e-12 75.9 129 35.7
BraA09t41345Z Brassica rapa HOM05D011209 ORTHO05D011495 8.0e-12 75.9 129 35.7
BcaC02g08568 Brassica carinata HOM05D002594 ORTHO05D011495 1.1e-11 75.5 146 35.6
BolC8t51853H Brassica oleracea HOM05D011209 ORTHO05D011495 3.1e-11 73.9 124 35.5
BolC8t51857H Brassica oleracea HOM05D011209 ORTHO05D011495 3.1e-11 73.9 124 35.5
BraA10t45046Z Brassica rapa HOM05D002594 ORTHO05D011495 3.1e-11 73.9 134 39.6
Thhalv10015432m.g Eutrema salsugineum HOM05D002594 ORTHO05D011495 8.9e-11 72.4 158 35.4
A10p30060 Brassica napus HOM05D002594 ORTHO05D011495 2.0e-10 71.2 134 38.8
BcaC03g15735 Brassica carinata HOM05D009193 ORTHO05D014963 5.8e-10 69.7 159 32.1
Carub.0006s0760 Capsella rubella HOM05D002594 ORTHO05D019719 7.5e-10 69.3 219 30.1
Carub.0006s0761 Capsella rubella HOM05D002594 ORTHO05D019719 6.4e-09 66.2 124 33.9
Thhalv10013875m.g Eutrema salsugineum HOM05D002594 ORTHO05D011495 6.4e-09 66.2 103 35.9
AT1G14640 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 1.1e-08 65.5 124 41.1
Carub.0007s2621 Capsella rubella HOM05D002594 ORTHO05D012777 1.1e-08 65.5 202 31.7
AL6G17040 Arabidopsis lyrata HOM05D011209 ORTHO05D019719 2.4e-08 64.3 305 23.3
Thhalv10006856m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 2.4e-08 64.3 258 27.9
QL09p022988 Quercus lobata HOM05D002594 ORTHO05D003499 2.4e-08 64.3 177 33.3
Carub.0001s1440 Capsella rubella HOM05D002594 ORTHO05D003499 4.1e-08 63.5 270 26.3
C08p35110 Brassica napus HOM05D009193 ORTHO05D014963 7.0e-08 62.8 209 31.1
AL1G48800 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 9.2e-08 62.4 181 34.8
Zm00001eb128190 Zea mays HOM05D002594 ORTHO05D003499 9.2e-08 62.4 258 27.5
EL10Ac2g04712 Beta vulgaris HOM05D002594 ORTHO05D003499 1.2e-07 62.0 164 34.8
CARHR015140 Cardamine hirsuta HOM05D002594 ORTHO05D003499 1.2e-07 62.0 120 38.3
VMungo0720G1145 Vigna mungo HOM05D002594 ORTHO05D003499 1.2e-07 62.0 171 33.3
Aa31LG1G18300 Aethionema arabicum HOM05D002594 ORTHO05D003499 1.6e-07 61.6 120 38.3
AL4G42840 Arabidopsis lyrata HOM05D040433 ORTHO05D031328 1.6e-07 61.6 130 32.3
AT1G14650 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 1.6e-07 61.6 120 37.5
Zm00001eb333220 Zea mays HOM05D002594 ORTHO05D003499 1.6e-07 61.6 92 38.0
Aqoxy5G03555 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 2.0e-07 61.2 95 36.8
Aqoxy7G03613 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 2.0e-07 61.2 159 35.2
CSS0036069 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 2.0e-07 61.2 169 36.1
CiPaw.05G038700 Carya illinoinensis HOM05D002594 ORTHO05D003499 2.0e-07 61.2 176 33.5
Medtr8g106170 Medicago truncatula HOM05D002594 ORTHO05D003499 2.0e-07 61.2 171 33.3
Psat7g089360 Pisum sativum HOM05D002594 ORTHO05D003499 2.0e-07 61.2 170 36.5
AL7G39900 Arabidopsis lyrata HOM05D002594 ORTHO05D012777 2.7e-07 60.8 246 29.7
AUR62012173 Chenopodium quinoa HOM05D002594 ORTHO05D003499 2.7e-07 60.8 164 34.1
AUR62012853 Chenopodium quinoa HOM05D002594 ORTHO05D003499 2.7e-07 60.8 164 34.1
AUR62022810 Chenopodium quinoa HOM05D002594 ORTHO05D003499 2.7e-07 60.8 164 34.1
Os02g0245000 Oryza sativa ssp. japonica HOM05D002594 ORTHO05D003499 2.7e-07 60.8 258 25.2
Psat7g003760 Pisum sativum HOM05D002594 ORTHO05D003499 2.7e-07 60.8 151 35.8
Ah.15g095630 Amaranthus hybridus HOM05D002594 ORTHO05D003499 3.5e-07 60.5 164 34.1
Hund24438 Selenicereus undatus HOM05D002594 ORTHO05D003499 3.5e-07 60.5 164 34.1
BolC4t26819H Brassica oleracea HOM05D002594 ORTHO05D011495 4.6e-07 60.1 110 30.9
CDE02G3426 Ceratophyllum demersum HOM05D002594 ORTHO05D003499 4.6e-07 60.1 261 26.1
Nitab4.5_0002162g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 4.6e-07 60.1 164 33.5
Phvul.007G037600 Phaseolus vulgaris HOM05D002594 ORTHO05D003499 4.6e-07 60.1 184 31.5
AL1G26610 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 6.0e-07 59.7 120 36.7
BolC4t26816H Brassica oleracea HOM05D002594 ORTHO05D011495 6.0e-07 59.7 110 30.9
Haze_03325 Corylus avellana HOM05D002594 ORTHO05D003499 6.0e-07 59.7 158 35.4
Glyma.20G126000 Glycine max HOM05D002594 ORTHO05D003499 6.0e-07 59.7 154 34.4
Lj1A1151T81 Lonicera japonica HOM05D002594 ORTHO05D003499 6.0e-07 59.7 151 34.4
Manes.04G066600 Manihot esculenta HOM05D002594 ORTHO05D003499 6.0e-07 59.7 174 31.6
Nitab4.5_0000688g0290 Nicotiana tabacum HOM05D002594 ORTHO05D003499 6.0e-07 59.7 164 33.5
Nitab4.5_0002208g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 6.0e-07 59.7 151 34.4
RcHm_v2.0_Chr4g0399901 Rosa chinensis HOM05D002594 ORTHO05D003499 6.0e-07 59.7 164 34.1
SHI18003 Sapria himalayana HOM05D002594 ORTHO05D003499 6.0e-07 59.7 143 32.9
Sp1g13010 Schrenkiella parvula HOM05D002594 ORTHO05D003499 6.0e-07 59.7 120 37.5
SEGI_06729 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 6.0e-07 59.7 92 40.2
Ca_23469_v3 Cicer arietinum L. HOM05D002594 ORTHO05D003499 7.8e-07 59.3 170 35.9
Lj3g0008201 Lotus japonicus HOM05D002594 ORTHO05D003499 7.8e-07 59.3 168 34.5
Lalb_Chr02g0145401 Lupinus albus HOM05D002594 ORTHO05D003499 7.8e-07 59.3 167 33.5
Lalb_Chr02g0145451 Lupinus albus HOM05D002594 ORTHO05D003499 7.8e-07 59.3 167 33.5
Prupe.1G077400 Prunus persica HOM05D002594 ORTHO05D003499 7.8e-07 59.3 151 35.1
Solyc04g005690.4 Solanum lycopersicum HOM05D002594 ORTHO05D003499 7.8e-07 59.3 164 33.5
Sopen04g001740 Solanum pennellii HOM05D002594 ORTHO05D003499 7.8e-07 59.3 164 33.5
PGSC0003DMG400002827 Solanum tuberosum HOM05D002594 ORTHO05D003499 7.8e-07 59.3 164 33.5
Actinidia05385 Actinidia chinensis HOM05D002594 ORTHO05D003499 1.0e-06 58.9 170 34.1
BcaC05g25379 Brassica carinata HOM05D002594 ORTHO05D003499 1.0e-06 58.9 305 26.9
C08p14840 Brassica napus HOM05D002594 ORTHO05D003499 1.0e-06 58.9 103 37.9
BolC5t30004H Brassica oleracea HOM05D002594 ORTHO05D003499 1.0e-06 58.9 305 26.9
CSS0003265 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 1.0e-06 58.9 156 36.5
Carub.0001s1441 Capsella rubella HOM05D002594 ORTHO05D003499 1.0e-06 58.9 120 36.7
Glyma.15G173200 Glycine max HOM05D002594 ORTHO05D003499 1.0e-06 58.9 150 34.7
THA.LOC104801765 Tarenaya hassleriana HOM05D002594 ORTHO05D003499 1.0e-06 58.9 147 34.7
Actinidia06681 Actinidia chinensis HOM05D002594 ORTHO05D003499 1.3e-06 58.5 157 35.0
Cfa010375 Carpinus fangiana HOM05D002594 ORTHO05D003499 1.3e-06 58.5 158 34.8
Ciclev10014300m.g Citrus clementina HOM05D002594 ORTHO05D003499 1.3e-06 58.5 164 33.5
Glyma.09G007700 Glycine max HOM05D002594 ORTHO05D003499 1.3e-06 58.5 167 32.9
Glyma.10G264400 Glycine max HOM05D002594 ORTHO05D003499 1.3e-06 58.5 167 32.9
Gohir.A03G110200 Gossypium hirsutum HOM05D002594 ORTHO05D003499 1.3e-06 58.5 174 31.0
A06p10690 Brassica napus HOM05D002594 ORTHO05D003499 1.7e-06 58.2 306 27.5
C05p12600 Brassica napus HOM05D002594 ORTHO05D003499 1.7e-06 58.2 303 25.4
BraA06t24251Z Brassica rapa HOM05D002594 ORTHO05D003499 1.7e-06 58.2 306 27.5
ClCG06G002870 Citrullus lanatus HOM05D002594 ORTHO05D003499 1.7e-06 58.2 151 34.4
ClCG11G007770 Citrullus lanatus HOM05D002594 ORTHO05D003499 1.7e-06 58.2 164 33.5
COL.COLO4_27671 Corchorus olitorius HOM05D002594 ORTHO05D003499 1.7e-06 58.2 92 41.3
MELO3C008151.2 Cucumis melo HOM05D002594 ORTHO05D003499 1.7e-06 58.2 164 33.5
Peaxi162Scf00036g01621 Petunia axillaris HOM05D002594 ORTHO05D003499 1.7e-06 58.2 164 32.9
Potri.005G094600 Populus trichocarpa HOM05D002594 ORTHO05D003499 1.7e-06 58.2 164 33.5
Sc21g0005370 Simmondsia chinensis HOM05D002594 ORTHO05D003499 1.7e-06 58.2 164 33.5
ATR0618G341 Amborella trichopoda HOM05D002594 ORTHO05D003499 2.3e-06 57.8 164 32.3
BcaB02g06534 Brassica carinata HOM05D002594 ORTHO05D003499 2.3e-06 57.8 120 36.7
Gohir.D02G134800 Gossypium hirsutum HOM05D002594 ORTHO05D003499 2.3e-06 57.8 174 31.0
Gorai.005G150700 Gossypium raimondii HOM05D002594 ORTHO05D003499 2.3e-06 57.8 174 31.0
TAR371G1001 Trochodendron aralioides HOM05D002594 ORTHO05D003499 2.3e-06 57.8 164 32.9
CAN.G809.36 Capsicum annuum HOM05D002594 ORTHO05D003499 3.0e-06 57.4 164 32.9
Oeu025252.1 Olea europaea HOM05D002594 ORTHO05D003499 3.0e-06 57.4 157 34.4
Potri.007G070700 Populus trichocarpa HOM05D002594 ORTHO05D003499 3.0e-06 57.4 164 32.9
Sabra05G0078300 Salix brachista HOM05D002594 ORTHO05D003499 3.0e-06 57.4 164 33.5
Sed0006467 Sechium edule HOM05D002594 ORTHO05D003499 3.0e-06 57.4 164 32.9
Solyc02g081960.3 Solanum lycopersicum HOM05D002594 ORTHO05D003499 3.0e-06 57.4 164 32.3
Sopen02g026590 Solanum pennellii HOM05D002594 ORTHO05D003499 3.0e-06 57.4 164 32.3
Duzib251G0736 Durio zibethinus HOM05D002594 ORTHO05D003499 3.9e-06 57.0 154 33.1
Eucgr.J00854 Eucalyptus grandis HOM05D002594 ORTHO05D003499 3.9e-06 57.0 154 33.1
MD13G1244100 Malus domestica HOM05D002594 ORTHO05D003499 3.9e-06 57.0 147 34.7
SEGI_11496 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 3.9e-06 57.0 92 40.2
PGSC0003DMG400007322 Solanum tuberosum HOM05D002594 ORTHO05D003499 3.9e-06 57.0 92 39.1
CAN.G150.2 Capsicum annuum HOM05D002594 ORTHO05D003499 5.0e-06 56.6 151 33.8
CARHR081900 Cardamine hirsuta HOM05D002594 ORTHO05D012777 5.0e-06 56.6 70 41.4
Cc09_g04870 Coffea canephora HOM05D002594 ORTHO05D003499 5.0e-06 56.6 164 32.9
Lj2g0011534 Lotus japonicus HOM05D002594 ORTHO05D003499 5.0e-06 56.6 151 33.8
PGR044G2151 Punica granatum HOM05D002594 ORTHO05D003499 5.0e-06 56.6 174 31.0
SGA_v2.0_scaffold423G51465 Striga asiatica HOM05D002594 ORTHO05D003499 5.0e-06 56.6 92 40.2
Thecc.02G311700 Theobroma cacao HOM05D002594 ORTHO05D003499 5.0e-06 56.6 154 33.1
Cc00_g29290 Coffea canephora HOM05D002594 ORTHO05D003499 6.6e-06 56.2 164 32.9
Lj5g0018790 Lotus japonicus HOM05D002594 ORTHO05D003499 6.6e-06 56.2 165 35.2
Lalb_Chr06g0165601 Lupinus albus HOM05D002594 ORTHO05D003499 6.6e-06 56.2 115 32.2
TPR.G26451 Trifolium pratense HOM05D002594 ORTHO05D003499 6.6e-06 56.2 158 34.2
TWI74G1222 Tripterygium wilfordii HOM05D002594 ORTHO05D003499 6.6e-06 56.2 147 34.0
vmacro07278 Vaccinium macrocarpon HOM05D002594 ORTHO05D003499 6.6e-06 56.2 126 34.9
BolC2t09509H Brassica oleracea HOM05D009193 ORTHO05D027634 8.6e-06 55.8 141 32.6
Nn7g37178 Nelumbo nucifera HOM05D002594 ORTHO05D003499 8.6e-06 55.8 194 28.9


User provided reference genes

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