Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 4.4e-106 388.3 243 100.0
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 2.3e-102 375.9 243 97.9
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.2e-95 353.6 255 86.3
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 3.2e-88 328.9 261 83.5
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 5.6e-85 318.2 255 82.7
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.9e-81 305.8 265 75.5
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 3.8e-81 305.4 267 76.4
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 3.8e-81 305.4 267 76.4
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 3.2e-80 302.4 267 76.4
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 4.2e-80 302.0 199 81.9
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 4.2e-80 302.0 270 75.6
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 2.1e-79 299.7 193 88.6
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 2.1e-79 299.7 193 88.6
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 1.0e-78 297.4 265 76.2
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.0e-78 295.8 270 74.4
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 3.3e-77 292.4 271 73.8
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 3.1e-75 285.8 197 81.2
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 2.6e-74 282.7 163 90.2
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 3.4e-74 282.3 151 95.4
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.3e-73 280.4 150 95.3
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.2e-73 279.6 197 80.2
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 6.5e-73 278.1 197 80.2
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.1e-72 277.3 151 93.4
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 5.5e-72 275.0 217 71.4
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 7.1e-72 274.6 266 74.1
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 2.1e-71 273.1 221 76.0
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 2.1e-71 273.1 224 73.2
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.0e-70 270.8 224 72.3
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 1.3e-70 270.4 233 68.7
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.8e-70 270.0 157 86.6
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 2.3e-70 269.6 159 88.7
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 3.0e-70 269.2 229 66.8
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 3.9e-70 268.9 157 87.9
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 5.1e-70 268.5 159 88.7
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 5.1e-70 268.5 159 88.1
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 5.1e-70 268.5 159 88.7
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 6.7e-70 268.1 234 69.2
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 6.7e-70 268.1 201 73.6
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.1e-69 267.3 199 74.4
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 1.1e-69 267.3 224 71.4
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.1e-69 267.3 168 86.3
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 1.1e-69 267.3 152 88.8
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.5e-69 266.9 159 87.4
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.5e-69 266.9 152 88.2
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.5e-69 266.9 157 89.2
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 2.5e-69 266.2 152 88.2
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.5e-69 266.2 159 86.8
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 3.3e-69 265.8 152 87.5
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 3.3e-69 265.8 152 89.5
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 3.3e-69 265.8 182 78.0
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 4.3e-69 265.4 165 83.0
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 4.3e-69 265.4 195 74.9
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 5.7e-69 265.0 165 83.0
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 9.7e-69 264.2 211 69.7
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 9.7e-69 264.2 258 65.5
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 9.7e-69 264.2 152 87.5
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.3e-68 263.8 221 73.3
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.3e-68 263.8 245 66.1
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.6e-68 263.5 208 71.2
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 2.8e-68 262.7 182 76.4
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 4.8e-68 261.9 159 84.9
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 4.8e-68 261.9 159 84.9
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 4.8e-68 261.9 200 73.5
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 4.8e-68 261.9 159 85.5
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 6.3e-68 261.5 158 88.0
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 6.3e-68 261.5 250 62.4
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.4e-67 260.4 159 84.9
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.4e-67 260.4 162 84.6
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.8e-67 260.0 152 86.8
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.8e-67 260.0 152 89.5
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.8e-67 260.0 264 67.4
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.4e-67 259.6 160 85.6
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 2.4e-67 259.6 158 84.2
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 4.1e-67 258.8 203 72.4
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 4.1e-67 258.8 222 71.6
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 5.3e-67 258.5 172 81.4
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 5.3e-67 258.5 172 81.4
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 6.9e-67 258.1 216 69.0
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 9.0e-67 257.7 223 72.2
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 9.0e-67 257.7 223 72.2
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.2e-66 257.3 220 70.9
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 1.5e-66 256.9 145 90.3
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.0e-66 256.5 160 85.0
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.6e-66 256.1 221 72.9
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 2.6e-66 256.1 152 87.5
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 2.6e-66 256.1 206 72.3
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 3.4e-66 255.8 230 70.9
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 5.9e-66 255.0 209 72.7
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 5.9e-66 255.0 206 71.8
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 7.7e-66 254.6 224 71.4
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 7.7e-66 254.6 178 77.5
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.0e-65 254.2 148 87.8
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.7e-65 253.4 157 84.1
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.7e-65 253.4 263 60.8
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.7e-65 253.4 263 60.8
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.7e-65 253.4 151 87.4
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.2e-65 253.1 222 70.7
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 2.9e-65 252.7 230 64.8
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 2.9e-65 252.7 226 67.7
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.8e-65 252.3 151 87.4
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 3.8e-65 252.3 157 83.4
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 6.5e-65 251.5 263 60.8
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 6.5e-65 251.5 219 71.2
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 6.5e-65 251.5 219 71.2
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 8.5e-65 251.1 157 82.8
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.1e-64 250.8 197 72.6
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.1e-64 250.8 217 71.9
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.4e-64 250.4 232 69.8
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.4e-64 250.4 199 71.4
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 1.4e-64 250.4 161 82.6
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.9e-64 250.0 152 84.9
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 3.2e-64 249.2 157 82.8
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.2e-64 249.2 153 85.6
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.2e-64 249.2 153 85.6
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 4.2e-64 248.8 160 81.9
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 5.5e-64 248.4 162 80.9
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.2e-63 247.3 168 79.2
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.4e-62 243.8 152 83.6
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.8e-62 243.4 153 83.0
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 5.1e-62 241.9 141 87.9
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 1.1e-61 240.7 157 79.6
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 1.5e-61 240.4 173 79.2
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 1.5e-61 240.4 157 79.6
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 5.7e-61 238.4 154 82.5
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.3e-60 237.3 149 84.6
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 2.2e-60 236.5 237 62.9
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 2.8e-60 236.1 228 62.3
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 6.3e-60 235.0 144 84.7
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 4.1e-59 232.3 170 76.5
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 4.5e-58 228.8 130 90.0
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 5.9e-58 228.4 142 83.1
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 5.0e-57 225.3 212 62.3
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 6.5e-57 224.9 158 76.6
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 1.4e-56 223.8 176 71.6
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 4.2e-56 222.2 159 75.5
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 9.4e-56 221.1 132 88.6
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 2.0e-53 213.4 136 80.1
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.5e-50 203.8 197 60.4
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.5e-50 203.8 121 84.3
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 3.5e-50 202.6 199 61.8
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 3.5e-50 202.6 199 61.8
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 8.5e-49 198.0 169 67.5
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 8.0e-47 191.4 158 68.4
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 9.7e-45 184.5 158 63.3
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.1e-43 181.0 152 65.1
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 2.6e-42 176.4 176 59.7
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 4.5e-42 175.6 213 55.9
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 5.0e-41 172.2 124 74.2
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 1.4e-38 164.1 159 61.0
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 5.3e-35 152.1 104 77.9
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 2.0e-34 150.2 94 80.9
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 2.2e-33 146.7 198 52.5
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 9.4e-32 141.4 199 47.7
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.1e-31 140.2 231 42.9
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.1e-31 140.2 231 42.9
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.7e-31 139.0 163 53.4
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 4.5e-26 122.5 138 52.2
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 8.9e-22 108.2 77 79.2
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.7e-20 102.8 201 42.3
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-19 100.9 88 69.3
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 4.1e-19 99.4 54 87.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.5e-13 80.9 50 80.0
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 2.0e-13 80.5 40 97.5


User provided reference genes

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