Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1668.7 846 100.0
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1645.2 846 98.5
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1641.7 846 98.3
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1640.2 846 98.2
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1638.6 846 98.2
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1634.8 846 98.0
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1547.7 849 92.1
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1542.3 849 92.5
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1526.5 849 90.9
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1521.5 849 90.7
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1510.4 849 90.3
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1498.8 896 86.0
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1453.0 859 85.9
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1369.0 861 78.7
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1240.3 861 70.5
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1240.3 861 70.5
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1239.9 861 70.4
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1236.9 864 70.5
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1233.8 866 69.9
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1231.5 863 70.2
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1223.0 859 70.7
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1215.3 860 70.1
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1214.5 862 69.6
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1213.4 860 69.5
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1210.3 861 70.0
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1209.1 865 68.8
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1208.4 858 69.3
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1208.0 860 69.1
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1206.8 860 70.1
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1205.7 860 70.2
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1203.0 863 70.1
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1201.8 868 68.4
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1201.0 860 69.9
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1194.9 878 68.2
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1194.1 861 68.4
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1193.3 864 69.2
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1189.1 862 67.9
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1187.2 863 67.7
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1186.8 862 67.9
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1186.4 895 67.4
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1185.2 862 67.7
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1181.0 860 68.5
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1180.6 859 68.7
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1178.7 860 68.0
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1176.4 860 67.3
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1174.8 861 66.9
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1174.1 866 66.9
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1169.1 860 67.2
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1167.1 863 67.1
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1166.4 861 67.6
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1165.6 860 67.2
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1165.2 865 66.7
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1162.5 864 66.6
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1158.3 830 68.9
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1158.3 862 66.8
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1157.9 860 66.4
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1157.1 863 67.0
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1155.6 862 66.7
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1154.4 886 65.5
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1153.3 860 66.5
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1151.7 851 66.9
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1150.2 865 67.4
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1144.8 863 65.7
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1142.5 864 65.7
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1138.3 865 65.7
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1132.5 927 62.0
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1130.2 859 66.1
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1127.1 879 64.3
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1125.9 857 65.8
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1122.1 851 65.1
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1121.3 837 66.2
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1119.8 863 65.4
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1119.0 856 65.3
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1118.2 856 65.2
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1116.7 865 65.2
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1112.1 865 64.9
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1109.4 857 63.7
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1105.9 860 65.2
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1105.1 1005 57.8
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1101.3 856 64.8
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1100.5 901 62.2
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1089.7 854 63.3
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1089.3 871 63.7
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1087.4 860 63.7
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1085.9 859 64.0
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 1.2e-310 1069.7 870 61.0
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 6.3e-309 1063.9 856 62.3
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 2.9e-306 1055.0 797 66.4
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 1.1e-305 1053.1 944 58.4
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 2.1e-304 1048.9 884 61.9
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 2.1e-304 1048.9 862 60.9
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 3.6e-280 968.4 889 58.3
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 7.5e-278 960.7 939 55.6
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 8.6e-274 947.2 747 65.3
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 5.8e-270 934.5 693 67.5
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 4.7e-264 914.8 792 61.1
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 1.5e-257 893.3 645 68.8
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 9.6e-257 890.6 833 61.8
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 3.1e-255 885.6 877 51.7
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 2.4e-252 875.9 873 51.3
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.3e-250 870.2 870 51.1
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.1e-233 813.9 621 65.9
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 5.5e-220 768.5 862 45.7
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 4.2e-196 689.1 958 41.8
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.3e-189 667.5 494 67.6
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.7e-189 667.2 877 43.1
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 7.2e-188 661.8 554 59.9
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 8.0e-179 631.7 582 57.9
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 4.0e-178 629.4 613 60.4
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 2.3e-170 603.6 382 74.9
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 2.0e-166 590.5 484 62.8
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 1.3e-165 587.8 501 60.3
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 2.6e-161 573.5 480 58.3
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 3.1e-146 523.5 444 61.5
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.7e-134 483.8 327 71.3
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.5e-124 450.7 378 61.4
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 8.4e-120 435.6 388 67.5
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.9e-87 328.2 236 66.5
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 2.1e-78 298.1 162 83.3
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 1.7e-67 261.9 667 28.3
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 4.4e-60 237.3 635 27.2
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 3.5e-41 174.5 155 57.4
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 1.1e-39 169.5 528 26.9
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.8e-35 154.5 124 58.9
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 6.4e-35 153.7 83 89.2
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 1.2e-33 149.4 127 56.7
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 1.1e-31 142.9 129 51.9
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 2.5e-31 141.7 97 68.0
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.5e-28 132.5 94 62.8
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 5.6e-23 114.0 674 21.5
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 3.9e-16 91.3 42 90.5
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 8.1e-14 83.6 99 47.5
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.2e-10 71.6 129 34.1


User provided reference genes

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