Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23548 Brassica carinata HOM05D002199 ORTHO05D007829 2.0e-62 242.3 121 100.0
BcaB06g27246 Brassica carinata HOM05D002199 ORTHO05D016797 4.4e-54 214.5 121 89.3
BcaB05g23636 Brassica carinata HOM05D002199 ORTHO05D007829 2.8e-37 158.7 148 62.2
BcaC03g16128 Brassica carinata HOM05D002199 ORTHO05D007829 5.4e-36 154.5 148 60.1
BraA02t07461Z Brassica rapa HOM05D002199 ORTHO05D007829 9.2e-36 153.7 148 60.8
C02p39050 Brassica napus HOM05D002199 ORTHO05D007829 1.2e-35 153.3 148 59.5
BolC2t09915H Brassica oleracea HOM05D002199 ORTHO05D007829 1.2e-35 153.3 148 59.5
A02p24750 Brassica napus HOM05D002199 ORTHO05D007829 1.6e-35 152.9 148 60.1
Thhalv10028404m.g Eutrema salsugineum HOM05D002199 ORTHO05D007829 5.9e-35 151.0 148 58.8
Sp6g02370 Schrenkiella parvula HOM05D002199 ORTHO05D007829 1.2e-32 143.3 153 56.2
AL6G50600 Arabidopsis lyrata HOM05D002199 ORTHO05D007829 1.6e-32 142.9 156 56.4
Carub.0006s3467 Capsella rubella HOM05D002199 ORTHO05D007829 2.1e-32 142.5 154 56.5
CARHR250730 Cardamine hirsuta HOM05D002199 ORTHO05D007829 3.6e-32 141.7 143 57.3
AT4G02460 Arabidopsis thaliana HOM05D002199 ORTHO05D007829 6.1e-32 141.0 156 55.8
Gohir.A12G131500 Gossypium hirsutum HOM05D002199 ORTHO05D007829 2.3e-31 139.0 151 54.3
Gohir.D12G135300 Gossypium hirsutum HOM05D002199 ORTHO05D007829 2.3e-31 139.0 151 54.3
Duzib138G0111 Durio zibethinus HOM05D002199 ORTHO05D007829 6.8e-31 137.5 143 55.2
Aa31LG5G2100 Aethionema arabicum HOM05D002199 ORTHO05D007829 8.9e-31 137.1 143 54.5
Gorai.008G146300 Gossypium raimondii HOM05D002199 ORTHO05D007829 1.2e-30 136.7 151 53.6
COL.COLO4_23367 Corchorus olitorius HOM05D002199 ORTHO05D007829 4.4e-30 134.8 143 54.5
Eucgr.K03466 Eucalyptus grandis HOM05D002199 ORTHO05D007829 4.4e-30 134.8 144 53.5
QL12p026673 Quercus lobata HOM05D002199 ORTHO05D007829 4.4e-30 134.8 145 55.2
ClCG09G005970 Citrullus lanatus HOM05D002199 ORTHO05D007829 1.3e-29 133.3 143 54.5
GSVIVG01027985001 Vitis vinifera HOM05D002199 ORTHO05D007829 1.3e-29 133.3 143 55.9
QL12p027267 Quercus lobata HOM05D002199 ORTHO05D007829 1.7e-29 132.9 145 55.2
Thecc.01G298000 Theobroma cacao HOM05D002199 ORTHO05D007829 2.2e-29 132.5 143 53.8
Cpa.g.sc9.220 Carica papaya HOM05D002199 ORTHO05D007829 2.9e-29 132.1 143 54.5
MELO3C016013.2 Cucumis melo HOM05D002199 ORTHO05D007829 2.9e-29 132.1 143 53.8
CsaV3_7G029150 Cucumis sativus L. HOM05D002199 ORTHO05D007829 2.9e-29 132.1 143 53.8
Nn4g25822 Nelumbo nucifera HOM05D002199 ORTHO05D007829 3.7e-29 131.7 143 53.8
Rhsim13G0011500 Rhododendron simsii HOM05D002199 ORTHO05D007829 3.7e-29 131.7 143 54.5
Aqoxy5G01396 Aquilegia oxysepala HOM05D002199 ORTHO05D007829 4.9e-29 131.3 145 53.1
FvH4_2g25510 Fragaria vesca HOM05D002199 ORTHO05D007829 4.9e-29 131.3 143 54.5
FAN15G0019 Fragaria x ananassa HOM05D002199 ORTHO05D007829 4.9e-29 131.3 143 54.5
FAN24G3312 Fragaria x ananassa HOM05D002199 ORTHO05D007829 4.9e-29 131.3 143 54.5
FAN27G3300 Fragaria x ananassa HOM05D002199 ORTHO05D007829 4.9e-29 131.3 143 54.5
RcHm_v2.0_Chr6g0293721 Rosa chinensis HOM05D002199 ORTHO05D007829 4.9e-29 131.3 143 54.5
MD11G1305800 Malus domestica HOM05D002199 ORTHO05D007829 6.4e-29 131.0 143 55.2
Actinidia24339 Actinidia chinensis HOM05D002199 ORTHO05D007829 8.3e-29 130.6 143 52.4
FAN20G0797 Fragaria x ananassa HOM05D002199 ORTHO05D007829 8.3e-29 130.6 143 53.8
arahy.Tifrunner.gnm1.ann1.9JI5AA Arachis hypogaea HOM05D002199 ORTHO05D007829 1.1e-28 130.2 145 53.1
arahy.Tifrunner.gnm1.ann1.Y4MBDE Arachis hypogaea HOM05D002199 ORTHO05D007829 1.1e-28 130.2 145 53.1
CSS0027670 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D007829 1.4e-28 129.8 143 53.8
Ciclev10018899m.g Citrus clementina HOM05D002199 ORTHO05D007829 1.8e-28 129.4 143 53.1
Haze_04909 Corylus avellana HOM05D002199 ORTHO05D007829 2.4e-28 129.0 145 53.1
Dinv33041 Davidia involucrata HOM05D002199 ORTHO05D007829 2.4e-28 129.0 143 53.8
CANSAT25G0223 Cannabis sativa HOM05D002199 ORTHO05D007829 3.2e-28 128.6 143 51.7
CiPaw.08G096900 Carya illinoinensis HOM05D002199 ORTHO05D007829 3.2e-28 128.6 145 53.1
PGR044G1196 Punica granatum HOM05D002199 ORTHO05D007829 4.1e-28 128.3 143 53.1
Manes.01G217500 Manihot esculenta HOM05D002199 ORTHO05D007829 5.4e-28 127.9 143 51.7
CANSAT25G3595 Cannabis sativa HOM05D002199 ORTHO05D007829 7.0e-28 127.5 143 51.0
Nitab4.5_0001756g0160 Nicotiana tabacum HOM05D002199 ORTHO05D007829 7.0e-28 127.5 151 52.3
Sabra14G0097300 Salix brachista HOM05D002199 ORTHO05D007829 7.0e-28 127.5 137 54.7
TAR365G1115 Trochodendron aralioides HOM05D002199 ORTHO05D007829 7.0e-28 127.5 143 52.4
Sopen09g029810 Solanum pennellii HOM05D002199 ORTHO05D007829 9.2e-28 127.1 144 52.1
EL10Ac1g01828 Beta vulgaris HOM05D002199 ORTHO05D007829 2.0e-27 125.9 143 51.0
Nitab4.5_0002469g0020 Nicotiana tabacum HOM05D002199 ORTHO05D007829 2.7e-27 125.6 151 51.0
Medtr1g088720 Medicago truncatula HOM05D002199 ORTHO05D007829 3.5e-27 125.2 143 53.1
Peaxi162Scf00001ggene001 Petunia axillaris HOM05D002199 ORTHO05D007829 3.5e-27 125.2 143 50.3
Lj2C1191T9 Lonicera japonica HOM05D002199 ORTHO05D007829 4.6e-27 124.8 143 52.4
Potri.014G130800 Populus trichocarpa HOM05D002199 ORTHO05D007829 4.6e-27 124.8 137 53.3
THA.LOC104801271 Tarenaya hassleriana HOM05D002199 ORTHO05D007829 7.8e-27 124.0 143 51.0
PSO832G1552 Papaver somniferum HOM05D002199 ORTHO05D007829 1.0e-26 123.6 139 53.2
AUR62033110 Chenopodium quinoa HOM05D002199 ORTHO05D007829 1.3e-26 123.2 143 51.0
Migut.D00202 Erythranthe guttata HOM05D002199 ORTHO05D007829 1.3e-26 123.2 145 49.7
Ca_10349_v3 Cicer arietinum L. HOM05D002199 ORTHO05D007829 1.7e-26 122.9 143 52.4
DCAR_012390 Daucus carota HOM05D002199 ORTHO05D007829 1.7e-26 122.9 123 53.7
Nitab4.5_0013887g0030 Nicotiana tabacum HOM05D002199 ORTHO05D007829 1.7e-26 122.9 144 52.1
ATR0796G058 Amborella trichopoda HOM05D002199 ORTHO05D007829 2.3e-26 122.5 142 46.5
CAN.G339.22 Capsicum annuum HOM05D002199 ORTHO05D007829 2.3e-26 122.5 146 48.6
CDE02G4041 Ceratophyllum demersum HOM05D002199 ORTHO05D007829 2.3e-26 122.5 143 47.6
TPR.G34015 Trifolium pratense HOM05D002199 ORTHO05D007829 2.3e-26 122.5 143 51.7
AUR62008658 Chenopodium quinoa HOM05D002199 ORTHO05D007829 3.0e-26 122.1 143 50.3
AUR62044353 Chenopodium quinoa HOM05D002199 ORTHO05D007829 3.9e-26 121.7 125 54.4
Glyma.02G155200 Glycine max HOM05D002199 ORTHO05D007829 5.0e-26 121.3 141 51.8
TWI59G1395 Tripterygium wilfordii HOM05D002199 ORTHO05D007829 8.6e-26 120.6 143 50.3
Cc01_g20720 Coffea canephora HOM05D002199 ORTHO05D007829 1.1e-25 120.2 143 50.3
Glyma.10G019200 Glycine max HOM05D002199 ORTHO05D007829 1.1e-25 120.2 141 51.8
ECA248G0237 Erigeron canadensis HOM05D002199 ORTHO05D007829 1.5e-25 119.8 143 50.3
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 1.5e-25 119.8 143 49.0
Lsat_1_v5_gn_5_190601 Lactuca sativa HOM05D002199 ORTHO05D007829 1.9e-25 119.4 143 49.0
Lj5g0020775 Lotus japonicus HOM05D002199 ORTHO05D007829 2.5e-25 119.0 143 50.3
Zm00001eb183500 Zea mays HOM05D002199 ORTHO05D007829 4.3e-25 118.2 147 46.3
Oeu011450.1 Olea europaea HOM05D002199 ORTHO05D007829 9.5e-25 117.1 139 51.1
HPP92_011379 Vanilla planifolia HOM05D002199 ORTHO05D007829 1.6e-24 116.3 142 47.2
SEGI_05920 Sequoiadendron giganteum HOM05D002199 ORTHO05D007829 6.2e-24 114.4 137 46.7
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 8.0e-24 114.0 73 80.8
Lalb_Chr06g0163421 Lupinus albus HOM05D002199 ORTHO05D007829 8.0e-24 114.0 139 46.8
Phvul.007G144100 Phaseolus vulgaris HOM05D002199 ORTHO05D007829 8.0e-24 114.0 139 50.4
MSTRG.18164 Avicennia marina HOM05D002199 ORTHO05D007829 1.0e-23 113.6 145 46.9
Os02g0592300 Oryza sativa ssp. japonica HOM05D002199 ORTHO05D007829 1.4e-23 113.2 148 43.9
HanXRQChr13g0413191 Helianthus annuus HOM05D002199 ORTHO05D007829 1.8e-23 112.8 143 47.6
Sed0008302 Sechium edule HOM05D002199 ORTHO05D007829 3.1e-23 112.1 73 78.1
unitig_0.g1175 Utricularia gibba HOM05D002199 ORTHO05D007829 3.1e-23 112.1 139 46.8
vmacro02462 Vaccinium macrocarpon HOM05D002199 ORTHO05D007829 6.8e-23 110.9 74 78.4
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 5.8e-22 107.8 73 75.3
Mapoly0103s0058 Marchantia polymorpha HOM05D002199 ORTHO05D007829 3.7e-21 105.1 139 40.3
Pp3c8_22650 Physcomitrium patens HOM05D002199 ORTHO05D007829 2.4e-20 102.4 137 41.6
VMungo0720G0513 Vigna mungo HOM05D002199 ORTHO05D007829 4.1e-20 101.7 72 73.6
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 1.6e-19 99.8 73 71.2
AagrBONN_evm.TU.Sc2ySwM_117.2165 Anthoceros agrestis HOM05D002199 ORTHO05D007829 3.5e-19 98.6 147 36.7
CBR_g46895 Chara braunii HOM05D002199 ORTHO05D007829 1.0e-18 97.1 141 40.4
SMO116G0380 Selaginella moellendorffii HOM05D002199 ORTHO05D007829 6.6e-18 94.4 146 37.0
SalBow1G1795 Salvia bowleyana HOM05D002199 ORTHO05D016797 2.3e-15 85.9 81 59.3
SalBow1G4554 Salvia bowleyana HOM05D002199 ORTHO05D016797 2.3e-15 85.9 81 59.3
SalBow4G0667 Salvia bowleyana HOM05D002199 ORTHO05D016797 2.3e-15 85.9 81 59.3
Cre04.g227000 Chlamydomonas reinhardtii HOM05D002199 ORTHO05D007829 3.1e-15 85.5 139 37.4
SalBow1G5129 Salvia bowleyana HOM05D002199 ORTHO05D016797 5.2e-15 84.7 71 63.4
SalBow1G8368 Salvia bowleyana HOM05D002199 ORTHO05D016797 5.2e-15 84.7 71 63.4
SalBow3G3473 Salvia bowleyana HOM05D002199 ORTHO05D016797 5.2e-15 84.7 71 63.4
Psat3g100960 Pisum sativum HOM05D004669 ORTHO05D005767 7.1e-12 74.3 74 59.5
MCO14G224 Micromonas commoda HOM05D002199 ORTHO05D007829 7.8e-11 70.9 154 30.5
PRCOL_00003998 Prasinoderma coloniale HOM05D002199 ORTHO05D007829 2.1e-08 62.8 72 45.8
SalBow2G3407 Salvia bowleyana HOM05D006131 ORTHO05D016797 3.1e-07 58.9 56 57.1


User provided reference genes

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