Gene: CSS0027670
General Information
Structural Information
- Species Camellia sinensis var. sinensis
- Gene Identifier CSS0027670
- Transcript Identifier CSS0027670.1
- Gene Type Coding gene
- Location Chr11 : 9500537-9508673 : negative
Gene Family Information
- ID HOM05D002199
- #Genes/#Species 305/99
- Phylogenetic origin
- ID ORTHO05D007829
- #Genes/#Species 126/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid CSS0027670.1
Descriptions
- Description PREDICTED: DNA mismatch repair protein PMS1 isoform X2 [Vitis vinifera]
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006298 | IEA | InterPro | mismatch repair | |
GO:0010154 | ISO | PLAZA Integrative Orthology | fruit development | AT4G02460 |
GO:0000956 | ISO | PLAZA Homology (enrichment) | nuclear-transcribed mRNA catabolic process | HOM05D002199 |
GO:0006310 | ISO | PLAZA Integrative Orthology | DNA recombination | AT4G02460 |
GO:0009555 | ISO | PLAZA Integrative Orthology | pollen development | AT4G02460 |
GO:0048316 | ISO | PLAZA Integrative Orthology | seed development | AT4G02460 |
GO:0006396 | ISO | PLAZA Homology (enrichment) | RNA processing | HOM05D002199 |
GO:0000398 | ISO | PLAZA Homology (enrichment) | mRNA splicing, via spliceosome | HOM05D002199 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005524 | IEA | InterPro | ATP binding | |
GO:0030983 | IEA | InterPro | mismatched DNA binding | |
GO:0016887 | IEA | InterPro | ATP hydrolysis activity |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0032300 | IEA | InterPro | mismatch repair complex | |
GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT4G02460 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR014721 | Ribosomal protein S5 domain 2-type fold, subgroup |
IPR013507 | DNA mismatch repair protein, S5 domain 2-like |
IPR038973 | DNA mismatch repair protein MutL/Mlh/Pms |
IPR036890 | Histidine kinase/HSP90-like ATPase superfamily |
IPR042120 | MutL, C-terminal domain, dimerisation subdomain |
IPR020568 | Ribosomal protein S5 domain 2-type fold |
IPR042121 | MutL, C-terminal domain, regulatory subdomain |
IPR014790 | MutL, C-terminal, dimerisation |
IPR037198 | MutL, C-terminal domain superfamily |
IPR002099 | DNA mismatch repair protein family, N-terminal |
Mapman id | Description |
---|---|
14.7.2.2 | DNA damage response.mismatch repair (MMR).MLH1-PMS1 heterodimer.component PMS1 |