Gene: SGA_v2.0_scaffold2G01402

General Information

Structural Information

  • Species Striga asiatica
  • Gene Identifier SGA_v2.0_scaffold2G01402
  • Transcript Identifier SGA_v2.0_scaffold2T01402
  • Gene Type Coding gene
  • Location scaffold2 : 5010894-5026516 : negative

Gene Family Information

  • ID HOM05D002199
  • #Genes/#Species 305/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

Descriptions

  • product DNA mismatch repair protein, putative
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
ISO
PLAZA Homology (enrichment)RNA processing HOM05D002199
GO:0048316
ISO
PLAZA Integrative Orthologyseed development AT4G02460
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT4G02460
GO:0006310
ISO
PLAZA Integrative OrthologyDNA recombination AT4G02460
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development AT4G02460
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006772
IEA
InterProthiamine metabolic process
GO:0006298
IEA
InterPromismatch repair
GO:0009229
IEA
InterProthiamine diphosphate biosynthetic process
GO:0000956
IEA
InterPronuclear-transcribed mRNA catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030983
IEA
InterPromismatched DNA binding
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0004788
IEA
InterProthiamine diphosphokinase activity
GO:0030975
IEA
InterProthiamine binding
GO:0005524
IEA
InterProATP binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G02460
GO:0032300
IEA
InterPromismatch repair complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR042120 MutL, C-terminal domain, dimerisation subdomain
IPR034101 Sm-like protein Lsm4
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR036371 Thiamin pyrophosphokinase, thiamin-binding domain superfamily
IPR014790 MutL, C-terminal, dimerisation
IPR007373 Thiamin pyrophosphokinase, thiamin-binding domain
IPR006282 Thiamin pyrophosphokinase
IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily
IPR007371 Thiamin pyrophosphokinase, catalytic domain
IPR001163 LSM domain, eukaryotic/archaea-type
IPR013507 DNA mismatch repair protein, S5 domain 2-like
IPR038973 DNA mismatch repair protein MutL/Mlh/Pms
IPR036890 Histidine kinase/HSP90-like ATPase superfamily
IPR010920 LSM domain superfamily
IPR037198 MutL, C-terminal domain superfamily
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
Mapman id Description
14.7.2.2 DNA damage response.mismatch repair (MMR).MLH1-PMS1 heterodimer.component PMS1
16.2.3.4 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm4
7.2.3 Coenzyme metabolism.thiamine pyrophosphate biosynthesis.thiamine diphosphokinase