Gene: FAN20G0797
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN20G0797
- Transcript Identifier FAN20G0797.1
- Gene Type Coding gene
- Location Fvb2-3 : 8268127-8276023 : negative
Gene Family Information
- ID HOM05D002199
- #Genes/#Species 305/99
- Phylogenetic origin
- ID ORTHO05D007829
- #Genes/#Species 126/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id augustus_masked-Fvb2-3-processed-gene-82.15.v1.0.a1
- pacid 50565697
Descriptions
- Description K10858 - DNA mismatch repair protein PMS2 (PMS2)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006298 | IEA | InterPro | mismatch repair | |
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
| GO:0000956 | IEA | InterPro | nuclear-transcribed mRNA catabolic process | |
| GO:0010154 | ISO | PLAZA Integrative Orthology | fruit development | AT4G02460 |
| GO:0006310 | ISO | PLAZA Integrative Orthology | DNA recombination | AT4G02460 |
| GO:0009555 | ISO | PLAZA Integrative Orthology | pollen development | AT4G02460 |
| GO:0048316 | ISO | PLAZA Integrative Orthology | seed development | AT4G02460 |
| GO:0006396 | ISO | PLAZA Homology (enrichment) | RNA processing | HOM05D002199 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0030983 | IEA | InterPro | mismatched DNA binding | |
| GO:0016887 | IEA | InterPro | ATP hydrolysis activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032300 | IEA | InterPro | mismatch repair complex | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT4G02460 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR014721 | Ribosomal protein S5 domain 2-type fold, subgroup |
| IPR036890 | Histidine kinase/HSP90-like ATPase superfamily |
| IPR042121 | MutL, C-terminal domain, regulatory subdomain |
| IPR013507 | DNA mismatch repair protein, S5 domain 2-like |
| IPR001163 | LSM domain, eukaryotic/archaea-type |
| IPR020568 | Ribosomal protein S5 domain 2-type fold |
| IPR014790 | MutL, C-terminal, dimerisation |
| IPR037198 | MutL, C-terminal domain superfamily |
| IPR002099 | DNA mismatch repair protein family, N-terminal |
| IPR038973 | DNA mismatch repair protein MutL/Mlh/Pms |
| IPR042120 | MutL, C-terminal domain, dimerisation subdomain |
| IPR034101 | Sm-like protein Lsm4 |
| IPR010920 | LSM domain superfamily |