Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 4.1e-204 714.5 366 100.0
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 2.6e-195 685.3 366 94.8
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 2.6e-195 685.3 366 94.8
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 2.2e-194 682.2 366 94.5
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 2.2e-194 682.2 366 94.3
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 1.1e-193 679.9 366 94.3
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 7.5e-190 667.2 366 91.8
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 4.5e-187 657.9 366 91.5
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 4.5e-187 657.9 366 91.5
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 5.0e-186 654.4 366 91.5
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 5.0e-186 654.4 367 90.7
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 2.5e-185 652.1 371 88.7
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 4.7e-184 647.9 372 88.2
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 1.8e-183 646.0 371 88.1
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 8.8e-183 643.7 371 87.6
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 9.2e-164 580.5 385 79.0
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.0e-159 567.0 366 77.9
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 3.7e-157 558.5 366 75.7
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 3.7e-157 558.5 377 75.3
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 7.8e-155 550.8 366 74.9
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 3.0e-154 548.9 366 75.1
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 2.5e-153 545.8 373 74.5
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 3.3e-153 545.4 374 74.3
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 5.6e-153 544.7 367 76.0
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 1.1e-151 540.4 375 74.1
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 2.3e-151 539.3 373 74.0
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 3.1e-151 538.9 366 73.2
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 4.0e-151 538.5 372 73.7
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 6.8e-151 537.7 367 73.8
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.5e-150 536.6 366 74.0
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 1.5e-150 536.6 367 73.6
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 2.6e-150 535.8 367 73.3
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 4.4e-150 535.0 367 74.1
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 2.2e-149 532.7 379 71.2
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 3.7e-149 531.9 366 72.4
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 8.3e-149 530.8 372 72.8
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 1.1e-148 530.4 379 70.4
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 3.2e-148 528.9 366 73.0
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 4.1e-148 528.5 367 72.2
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 5.4e-148 528.1 374 71.4
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 1.2e-147 526.9 369 71.3
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 1.6e-147 526.6 367 71.1
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 1.6e-147 526.6 367 73.6
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 3.5e-147 525.4 379 69.7
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 4.6e-147 525.0 366 71.0
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 7.8e-147 524.2 367 70.8
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 7.8e-147 524.2 366 71.3
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 7.8e-147 524.2 366 72.1
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 1.0e-146 523.9 367 73.6
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 3.9e-146 521.9 380 69.7
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 3.9e-146 521.9 368 70.7
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 8.6e-146 520.8 374 70.9
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 1.1e-145 520.4 379 69.9
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 2.5e-145 519.2 366 69.7
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 3.3e-145 518.8 383 68.9
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 3.3e-145 518.8 379 69.7
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.6e-144 516.5 379 69.1
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.6e-144 516.5 366 71.6
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 2.8e-144 515.8 367 71.9
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.6e-144 515.4 362 72.4
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 6.2e-144 514.6 367 70.3
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 5.2e-143 511.5 366 71.3
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 6.8e-143 511.1 367 69.5
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 2.0e-142 509.6 379 68.1
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 4.4e-142 508.4 366 69.4
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 4.4e-142 508.4 368 68.8
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 7.6e-142 507.7 367 71.1
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 2.2e-141 506.1 368 69.3
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 4.9e-141 505.0 366 69.7
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 1.4e-140 503.4 369 69.6
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.4e-140 502.7 366 69.4
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 9.2e-140 500.7 381 66.4
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 6.0e-139 498.0 398 66.6
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 3.0e-138 495.7 375 66.1
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 3.9e-138 495.4 369 69.4
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 6.6e-138 494.6 357 69.2
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 6.6e-138 494.6 378 66.1
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 8.6e-138 494.2 382 64.7
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 5.6e-137 491.5 366 68.6
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-136 490.0 382 64.4
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 4.7e-136 488.4 368 67.4
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 1.2e-134 483.8 365 66.3
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 1.5e-134 483.4 365 66.3
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.4e-134 481.9 378 65.1
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 7.6e-134 481.1 367 67.6
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 3.2e-132 475.7 367 67.3
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 7.1e-132 474.6 367 66.8
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 9.3e-132 474.2 368 65.5
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 7.8e-131 471.1 367 65.7
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 1.0e-130 470.7 368 64.7
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 1.3e-130 470.3 367 64.6
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 1.3e-130 470.3 367 65.4
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 1.5e-129 466.8 367 65.4
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.3e-128 463.8 363 65.6
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 1.3e-128 463.8 369 64.5
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.6e-128 463.4 367 65.1
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 2.1e-128 463.0 370 65.4
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.6e-128 462.2 319 73.0
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 3.6e-128 462.2 367 65.1
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 1.8e-127 459.9 367 64.3
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 1.8e-127 459.9 367 64.6
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 3.1e-127 459.1 370 63.5
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 3.1e-127 459.1 370 63.2
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 3.1e-127 459.1 367 65.4
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 4.0e-127 458.8 314 74.5
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 9.3e-124 447.6 367 64.9
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 3.0e-122 442.6 366 60.9
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 1.9e-121 439.9 369 64.0
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 4.3e-121 438.7 379 60.7
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 2.4e-119 433.0 366 60.4
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 1.5e-118 430.3 341 63.6
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 2.2e-117 426.4 354 63.6
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 3.9e-114 415.6 360 60.0
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 6.7e-114 414.8 297 72.4
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 1.1e-113 414.1 386 54.7
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 9.6e-113 411.0 320 67.5
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.2e-110 404.1 369 55.8
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.1e-108 397.5 319 65.2
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 2.0e-102 376.7 371 55.8
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 2.5e-100 369.8 366 53.8
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 9.7e-97 357.8 278 66.2
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 2.4e-95 353.2 300 61.3
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 3.4e-94 349.4 309 58.6
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.4e-82 310.8 189 84.1
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.7e-70 270.0 162 84.0
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 8.5e-69 265.0 377 39.8
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.2e-67 261.2 161 79.5
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 1.0e-66 258.1 279 48.4
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 3.8e-61 239.6 257 52.9
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 2.0e-57 227.3 327 44.3
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 5.7e-57 225.7 241 50.2
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 5.4e-55 219.2 160 71.2
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.7e-53 214.2 159 71.1
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 2.9e-53 213.4 334 35.0
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 2.3e-50 203.8 181 54.7
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.3e-48 198.0 167 63.5
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 4.6e-46 189.5 167 61.7
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.2e-43 181.4 118 81.4
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 5.2e-42 176.0 228 43.4
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 7.5e-41 172.2 133 72.2
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 1.7e-40 171.0 133 71.4
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 1.6e-30 137.9 81 85.2
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 2.7e-30 137.1 100 77.0
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.3e-29 134.8 121 60.3
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 5.1e-29 132.9 98 64.3
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 2.4e-23 114.0 177 39.5
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 6.0e-22 109.4 84 64.3
A07p02870 Brassica napus HOM05D012141 ORTHO05D013118 2.8e-19 100.5 64 79.7
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.4e-15 88.2 51 84.3
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.4e-15 88.2 51 84.3


User provided reference genes

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