Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00993 Brassica carinata HOM05D004376 ORTHO05D005304 6.7e-31 136.7 70 100.0
BcaB06g25791 Brassica carinata HOM05D004376 ORTHO05D005304 8.2e-29 129.8 69 95.7
BcaB05g23404 Brassica carinata HOM05D004376 ORTHO05D005304 1.8e-28 128.6 69 95.7
BcaNung05112 Brassica carinata HOM05D004376 ORTHO05D005304 5.3e-28 127.1 69 92.8
BcaC08g47290 Brassica carinata HOM05D004376 ORTHO05D005304 1.2e-27 125.9 69 91.3
BcaNung05111 Brassica carinata HOM05D004376 ORTHO05D005304 1.2e-27 125.9 69 91.3
BolC6t40045H Brassica oleracea HOM05D004376 ORTHO05D005304 1.2e-27 125.9 69 91.3
BcaC08g47105 Brassica carinata HOM05D004376 ORTHO05D005304 1.5e-27 125.6 69 91.3
BcaB04g17458 Brassica carinata HOM05D004376 ORTHO05D005304 2.0e-27 125.2 69 91.3
A07p41680 Brassica napus HOM05D004376 ORTHO05D005304 2.0e-27 125.2 69 91.3
C06p50060 Brassica napus HOM05D004376 ORTHO05D005304 2.0e-27 125.2 69 91.3
BraA07t31697Z Brassica rapa HOM05D004376 ORTHO05D005304 5.9e-27 123.6 69 89.9
Sp5g31240 Schrenkiella parvula HOM05D004376 ORTHO05D005304 7.7e-27 123.2 69 88.4
Thhalv10018512m.g Eutrema salsugineum HOM05D004376 ORTHO05D005304 6.5e-26 120.2 69 87.0
AL2G36160 Arabidopsis lyrata HOM05D004376 ORTHO05D005304 1.1e-25 119.4 68 88.2
Carub.0002s2300 Capsella rubella HOM05D004376 ORTHO05D005304 1.4e-25 119.0 68 88.2
CARHR069660 Cardamine hirsuta HOM05D004376 ORTHO05D005304 7.2e-25 116.7 69 87.0
AT1G76120 Arabidopsis thaliana HOM05D004376 ORTHO05D005304 9.4e-25 116.3 68 85.3
Aa31LG4G6240 Aethionema arabicum HOM05D004376 ORTHO05D005304 3.6e-24 114.4 68 80.9
THA.LOC104813770 Tarenaya hassleriana HOM05D004376 ORTHO05D005304 6.1e-24 113.6 68 76.5
Sopen04g035720 Solanum pennellii HOM05D004376 ORTHO05D005304 7.9e-24 113.2 68 79.4
PGSC0003DMG400009961 Solanum tuberosum HOM05D004376 ORTHO05D005304 1.0e-23 112.8 68 79.4
CAN.G311.86 Capsicum annuum HOM05D004376 ORTHO05D005304 1.8e-23 112.1 68 79.4
Aa31LG7G4710 Aethionema arabicum HOM05D004376 ORTHO05D005304 5.1e-23 110.5 68 79.4
Sp1g18110 Schrenkiella parvula HOM05D004376 ORTHO05D005304 8.8e-23 109.8 68 79.4
COL.COLO4_36544 Corchorus olitorius HOM05D004376 ORTHO05D005304 1.1e-22 109.4 68 73.5
QL02p013385 Quercus lobata HOM05D004376 ORTHO05D005304 1.1e-22 109.4 68 76.5
AL1G33290 Arabidopsis lyrata HOM05D004376 ORTHO05D005304 1.5e-22 109.0 68 79.4
AL1G33250 Arabidopsis lyrata HOM05D004376 ORTHO05D005304 2.0e-22 108.6 68 77.9
BcaB07g32040 Brassica carinata HOM05D004376 ORTHO05D005304 2.0e-22 108.6 68 77.9
BcaC05g25947 Brassica carinata HOM05D004376 ORTHO05D005304 2.0e-22 108.6 68 77.9
C05p18990 Brassica napus HOM05D004376 ORTHO05D005304 2.0e-22 108.6 68 77.9
BolC5t30599H Brassica oleracea HOM05D004376 ORTHO05D005304 2.0e-22 108.6 68 77.9
SGA_v2.0_scaffold351G49653 Striga asiatica HOM05D004376 ORTHO05D005304 2.0e-22 108.6 67 74.6
CARHR020830 Cardamine hirsuta HOM05D004376 ORTHO05D005304 3.3e-22 107.8 68 77.9
Thhalv10007295m.g Eutrema salsugineum HOM05D004376 ORTHO05D005304 3.3e-22 107.8 68 77.9
Carub.0001s1987 Capsella rubella HOM05D004376 ORTHO05D005304 4.4e-22 107.5 68 76.5
Sed0022390 Sechium edule HOM05D004376 ORTHO05D005304 4.4e-22 107.5 68 76.5
Aa31LG7G3290 Aethionema arabicum HOM05D004376 ORTHO05D005304 5.7e-22 107.1 68 77.9
HanXRQChr14g0428961 Helianthus annuus HOM05D004376 ORTHO05D005304 5.7e-22 107.1 66 77.3
MSTRG.25283 Avicennia marina HOM05D004376 ORTHO05D005304 9.7e-22 106.3 68 70.6
CSS0003340 Camellia sinensis var. sinensis HOM05D004376 ORTHO05D005304 9.7e-22 106.3 68 72.1
CSS0022497 Camellia sinensis var. sinensis HOM05D004376 ORTHO05D005304 9.7e-22 106.3 68 72.1
AT1G20370 Arabidopsis thaliana HOM05D004376 ORTHO05D005304 1.3e-21 105.9 68 76.5
A06p16450 Brassica napus HOM05D004376 ORTHO05D005304 1.3e-21 105.9 68 76.5
BraA06t24749Z Brassica rapa HOM05D004376 ORTHO05D005304 1.3e-21 105.9 68 76.5
Gohir.A06G168500 Gossypium hirsutum HOM05D004376 ORTHO05D005304 1.3e-21 105.9 68 70.6
Gohir.D06G176200 Gossypium hirsutum HOM05D004376 ORTHO05D005304 1.3e-21 105.9 68 70.6
Gorai.010G207100 Gossypium raimondii HOM05D004376 ORTHO05D005304 1.3e-21 105.9 68 70.6
Phvul.003G157400 Phaseolus vulgaris HOM05D004376 ORTHO05D005304 1.3e-21 105.9 68 75.0
Lsat_1_v5_gn_2_5561 Lactuca sativa HOM05D004376 ORTHO05D005304 1.7e-21 105.5 68 72.1
Thecc.10G086100 Theobroma cacao HOM05D004376 ORTHO05D005304 1.7e-21 105.5 68 69.1
PGR083G0927 Punica granatum HOM05D004376 ORTHO05D005304 2.2e-21 105.1 68 72.1
PGR083G1997 Punica granatum HOM05D004376 ORTHO05D005304 2.2e-21 105.1 68 70.6
TWI36G0200 Tripterygium wilfordii HOM05D004376 ORTHO05D005304 2.2e-21 105.1 68 72.1
VMungo1215G0405 Vigna mungo HOM05D004376 ORTHO05D005304 2.2e-21 105.1 68 75.0
CsaV3_4G037020 Cucumis sativus L. HOM05D004376 ORTHO05D005304 2.8e-21 104.8 68 72.1
Lalb_Chr07g0179761 Lupinus albus HOM05D004376 ORTHO05D005304 2.8e-21 104.8 68 73.5
SGA_v2.0_scaffold275G46548 Striga asiatica HOM05D004376 ORTHO05D005304 2.8e-21 104.8 66 77.3
CiPaw.07G142200 Carya illinoinensis HOM05D004376 ORTHO05D005304 3.7e-21 104.4 68 72.1
Nn5g30880 Nelumbo nucifera HOM05D004376 ORTHO05D005304 3.7e-21 104.4 68 69.1
Oeu053188.1 Olea europaea HOM05D004376 ORTHO05D005304 3.7e-21 104.4 66 74.2
Aqoxy6G01883 Aquilegia oxysepala HOM05D004376 ORTHO05D005304 4.8e-21 104.0 69 71.0
ClCG05G015300 Citrullus lanatus HOM05D004376 ORTHO05D005304 4.8e-21 104.0 68 72.1
MELO3C017001.2 Cucumis melo HOM05D004376 ORTHO05D005304 4.8e-21 104.0 68 72.1
Manes.18G008300 Manihot esculenta HOM05D004376 ORTHO05D005304 4.8e-21 104.0 68 72.1
Potri.002G014400 Populus trichocarpa HOM05D004376 ORTHO05D005304 4.8e-21 104.0 68 70.6
TAR628G0340 Trochodendron aralioides HOM05D004376 ORTHO05D005304 4.8e-21 104.0 68 72.1
Zm00001eb250100 Zea mays HOM05D004376 ORTHO05D005304 4.8e-21 104.0 68 72.1
Actinidia37959 Actinidia chinensis HOM05D004376 ORTHO05D005304 6.3e-21 103.6 69 71.0
CANSAT25G0081 Cannabis sativa HOM05D004376 ORTHO05D005304 6.3e-21 103.6 68 70.6
CDE06G1209 Ceratophyllum demersum HOM05D004376 ORTHO05D005304 6.3e-21 103.6 68 72.1
Dinv31908 Davidia involucrata HOM05D004376 ORTHO05D005304 6.3e-21 103.6 65 73.8
ECA238G2008 Erigeron canadensis HOM05D004376 ORTHO05D005304 6.3e-21 103.6 68 70.6
Glyma.02G202300 Glycine max HOM05D004376 ORTHO05D005304 6.3e-21 103.6 68 72.1
RcHm_v2.0_Chr6g0303831 Rosa chinensis HOM05D004376 ORTHO05D005304 6.3e-21 103.6 68 70.6
Cfa014026 Carpinus fangiana HOM05D004376 ORTHO05D005304 8.2e-21 103.2 68 69.1
Ciclev10000838m.g Citrus clementina HOM05D004376 ORTHO05D005304 8.2e-21 103.2 68 69.1
Haze_22730 Corylus avellana HOM05D004376 ORTHO05D005304 8.2e-21 103.2 68 69.1
Os02g0668400 Oryza sativa ssp. japonica HOM05D004376 ORTHO05D005304 8.2e-21 103.2 68 72.1
DCAR_023004 Daucus carota HOM05D004376 ORTHO05D005304 1.1e-20 102.8 68 72.1
Cc10_g00930 Coffea canephora HOM05D004376 ORTHO05D005304 1.4e-20 102.4 66 74.2
vmacro04385 Vaccinium macrocarpon HOM05D004376 ORTHO05D005304 1.4e-20 102.4 68 69.1
Cpa.g.sc26.243 Carica papaya HOM05D004376 ORTHO05D005304 1.8e-20 102.1 68 69.1
Eucgr.F01708 Eucalyptus grandis HOM05D004376 ORTHO05D005304 1.8e-20 102.1 68 69.1
FAN27G0101 Fragaria x ananassa HOM05D004376 ORTHO05D005304 1.8e-20 102.1 68 70.6
Potri.005G247000 Populus trichocarpa HOM05D004376 ORTHO05D005304 2.4e-20 101.7 68 70.6
Sabra05G0190800 Salix brachista HOM05D004376 ORTHO05D005304 2.4e-20 101.7 68 69.1
SalBow7G0439 Salvia bowleyana HOM05D004376 ORTHO05D005304 2.4e-20 101.7 68 70.6
Sed0015523 Sechium edule HOM05D004376 ORTHO05D005304 2.4e-20 101.7 69 71.0
Migut.C00912 Erythranthe guttata HOM05D004376 ORTHO05D005304 3.1e-20 101.3 66 71.2
Psat4g008680 Pisum sativum HOM05D004376 ORTHO05D005304 3.1e-20 101.3 69 68.1
GSVIVG01008716001 Vitis vinifera HOM05D004376 ORTHO05D005304 3.1e-20 101.3 69 66.7
Duzib106G0676 Durio zibethinus HOM05D004376 ORTHO05D005304 4.1e-20 100.9 69 66.7
HanXRQChr06g0184861 Helianthus annuus HOM05D004376 ORTHO05D005304 4.1e-20 100.9 68 69.1
Oeu021477.1 Olea europaea HOM05D004376 ORTHO05D005304 5.3e-20 100.5 67 68.7
Prupe.1G357900 Prunus persica HOM05D004376 ORTHO05D005304 5.3e-20 100.5 68 69.1
TPR.G4183 Trifolium pratense HOM05D004376 ORTHO05D005304 5.3e-20 100.5 69 66.7
FAN15G0873 Fragaria x ananassa HOM05D004376 ORTHO05D005304 6.9e-20 100.1 68 69.1
Lj4C16G12 Lonicera japonica HOM05D004376 ORTHO05D005304 6.9e-20 100.1 66 68.2
Lj4g0015297 Lotus japonicus HOM05D004376 ORTHO05D005304 6.9e-20 100.1 69 68.1
Medtr4g131200 Medicago truncatula HOM05D004376 ORTHO05D005304 6.9e-20 100.1 69 66.7
Medtr4g131220 Medicago truncatula HOM05D004376 ORTHO05D005304 6.9e-20 100.1 69 66.7
Medtr4g131270 Medicago truncatula HOM05D004376 ORTHO05D005304 6.9e-20 100.1 69 66.7
SEGI_08421 Sequoiadendron giganteum HOM05D004376 ORTHO05D005304 6.9e-20 100.1 68 67.6
arahy.Tifrunner.gnm1.ann1.B15N49 Arachis hypogaea HOM05D004376 ORTHO05D005304 9.1e-20 99.8 68 69.1
arahy.Tifrunner.gnm1.ann1.CAQ3WI Arachis hypogaea HOM05D004376 ORTHO05D005304 9.1e-20 99.8 68 69.1
Glyma.19G018000 Glycine max HOM05D004376 ORTHO05D005304 9.1e-20 99.8 68 69.1
Lalb_Chr12g0198601 Lupinus albus HOM05D004376 ORTHO05D005304 9.1e-20 99.8 68 70.6
MD15G1005400 Malus domestica HOM05D004376 ORTHO05D005304 9.1e-20 99.8 68 69.1
MBI05_g12852_MAGBIO Magnolia biondii HOM05D004376 ORTHO05D005304 1.5e-19 99.0 68 64.7
PSO541G0445 Papaver somniferum HOM05D004376 ORTHO05D005304 2.6e-19 98.2 68 67.6
PSO675G7961 Papaver somniferum HOM05D004376 ORTHO05D005304 2.6e-19 98.2 68 67.6
unitig_26.g9890 Utricularia gibba HOM05D004376 ORTHO05D005304 2.6e-19 98.2 68 66.2
HPP92_021052 Vanilla planifolia HOM05D004376 ORTHO05D005304 2.6e-19 98.2 65 70.8
Sc19g0001720 Simmondsia chinensis HOM05D004376 ORTHO05D005304 3.4e-19 97.8 69 65.2
Actinidia29774 Actinidia chinensis HOM05D004376 ORTHO05D005304 4.5e-19 97.4 68 66.2
ATR0661G260 Amborella trichopoda HOM05D004376 ORTHO05D005304 4.5e-19 97.4 68 69.1
Hund17272 Selenicereus undatus HOM05D004376 ORTHO05D005304 4.5e-19 97.4 68 64.7
AagrBONN_evm.TU.Sc2ySwM_228.5747 Anthoceros agrestis HOM05D004376 ORTHO05D005304 5.0e-18 94.0 68 63.2
Ah.05g171420 Amaranthus hybridus HOM05D004376 ORTHO05D005304 8.5e-18 93.2 68 61.8
SHI08024 Sapria himalayana HOM05D004376 ORTHO05D005304 1.1e-17 92.8 69 60.9
AUR62019106 Chenopodium quinoa HOM05D004376 ORTHO05D005304 2.5e-17 91.7 69 56.5
EL10Ac1g00494 Beta vulgaris HOM05D004376 ORTHO05D005304 4.2e-17 90.9 68 61.8
AUR62014364 Chenopodium quinoa HOM05D004376 ORTHO05D005304 4.2e-17 90.9 69 56.5
FAN11G1577 Fragaria x ananassa HOM05D004376 ORTHO05D005304 5.5e-17 90.5 61 67.2
Mapoly0057s0025 Marchantia polymorpha HOM05D004376 ORTHO05D005304 9.4e-17 89.7 68 60.3
CAN.G11.23 Capsicum annuum HOM05D004376 ORTHO05D005304 2.1e-16 88.6 68 63.2
Mapoly0001s0557 Marchantia polymorpha HOM05D004376 ORTHO05D005304 3.6e-16 87.8 68 57.4
Nitab4.5_0003280g0050 Nicotiana tabacum HOM05D004376 ORTHO05D005304 1.8e-15 85.5 49 79.6
Pp3c5_14220 Physcomitrium patens HOM05D004376 ORTHO05D005304 1.1e-14 82.8 66 57.6
Pp3c6_13480 Physcomitrium patens HOM05D004376 ORTHO05D005304 2.0e-14 82.0 69 53.6
SMO270G0142 Selaginella moellendorffii HOM05D004376 ORTHO05D005304 5.7e-14 80.5 69 50.7
CBR_g17013 Chara braunii HOM05D004376 ORTHO05D005304 1.7e-13 79.0 65 56.9
Peaxi162Scf00174g01119 Petunia axillaris HOM05D004376 ORTHO05D005304 1.4e-12 75.9 49 69.4
Glyma.17G075500 Glycine max HOM05D004376 ORTHO05D005304 7.0e-12 73.6 57 59.6
DCAR_016746 Daucus carota HOM05D004376 ORTHO05D005304 1.6e-11 72.4 51 62.7
Solyc04g082070.4 Solanum lycopersicum HOM05D004376 ORTHO05D005304 3.5e-11 71.2 45 75.6
Ca_21112_v3 Cicer arietinum L. HOM05D004376 ORTHO05D005304 1.7e-10 68.9 66 54.5
SMO301G0050 Selaginella moellendorffii HOM05D004376 ORTHO05D005304 1.6e-08 62.4 66 47.0
CDE06G1859 Ceratophyllum demersum HOM05D004376 ORTHO05D005304 3.0e-07 58.2 52 69.2
MCO12G479 Micromonas commoda HOM05D004376 ORTHO05D005304 1.2e-06 56.2 57 45.6
Atru.chr13.191 Acer truncatum HOM05D004376 ORTHO05D005304 1.5e-06 55.8 31 80.6
PRCOL_00003413 Prasinoderma coloniale HOM05D004376 ORTHO05D005304 4.4e-06 54.3 68 38.2
Zm00001eb016190 Zea mays HOM05D006159 ORTHO05D007624 7.5e-06 53.5 60 40.0


User provided reference genes

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