Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 0.0e+00 1273.5 630 100.0
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 3.6e-293 1011.1 613 79.4
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 3.2e-289 998.0 614 78.7
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 5.4e-289 997.3 614 78.8
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.0e-287 993.0 614 78.5
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 1.5e-286 989.2 614 78.2
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 6.8e-284 980.3 614 76.9
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 4.4e-283 977.6 614 77.7
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 1.4e-281 972.6 614 77.2
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 3.2e-281 971.5 612 76.8
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 2.7e-280 968.4 614 76.4
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 1.5e-278 962.6 614 76.7
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 3.3e-278 961.4 614 75.4
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.1e-276 956.4 616 74.0
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 1.1e-276 956.4 613 75.2
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 1.1e-276 956.4 614 76.1
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 1.8e-276 955.7 613 76.2
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 9.0e-276 953.4 613 76.0
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.7e-274 949.1 615 75.0
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 6.4e-274 947.2 614 74.3
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 6.4e-274 947.2 618 74.4
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 1.9e-273 945.7 614 76.4
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 1.6e-272 942.6 613 73.7
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 3.5e-272 941.4 614 74.4
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 5.6e-270 934.1 618 73.0
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 7.3e-270 933.7 614 73.6
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 9.6e-270 933.3 613 73.6
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 9.6e-270 933.3 618 73.8
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 8.1e-269 930.2 613 74.1
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 2.4e-268 928.7 616 72.1
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 2.4e-268 928.7 616 72.1
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 2.4e-268 928.7 616 72.1
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 6.9e-268 927.2 616 72.7
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 9.0e-268 926.8 617 74.4
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 9.9e-267 923.3 614 73.5
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 1.3e-266 922.9 615 72.2
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 1.3e-266 922.9 613 74.1
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 1.7e-266 922.5 613 72.4
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 2.2e-266 922.2 615 73.5
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 3.8e-266 921.4 616 71.9
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 3.8e-266 921.4 616 72.1
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 1.1e-265 919.8 616 71.8
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 1.1e-265 919.8 616 71.8
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 2.4e-265 918.7 613 72.3
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 5.4e-265 917.5 616 72.1
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 2.1e-264 915.6 616 71.9
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 4.6e-264 914.4 614 73.3
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 1.3e-263 912.9 616 71.1
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 3.0e-263 911.8 614 72.0
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 3.9e-263 911.4 613 72.8
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 8.7e-263 910.2 613 73.1
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 1.9e-262 909.1 613 71.6
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 4.3e-262 907.9 616 70.9
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 2.8e-261 905.2 613 72.4
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 4.8e-261 904.4 614 72.0
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.8e-260 902.5 613 71.0
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 9.0e-260 900.2 618 70.7
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 2.6e-259 898.7 618 70.1
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 4.5e-259 897.9 613 72.4
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.8e-259 897.5 618 70.7
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 1.7e-258 896.0 660 68.5
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 4.9e-258 894.4 616 69.6
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 6.5e-258 894.0 614 70.4
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 1.1e-257 893.3 619 71.2
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 1.1e-257 893.3 614 69.7
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 2.7e-256 888.6 617 70.5
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 2.7e-256 888.6 613 69.8
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 2.3e-255 885.6 615 70.1
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 6.7e-255 884.0 616 70.1
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 2.5e-254 882.1 665 66.8
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 3.3e-254 881.7 616 68.7
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 4.3e-254 881.3 634 68.9
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 4.3e-254 881.3 601 70.5
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 5.7e-254 880.9 616 68.7
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 7.4e-254 880.6 610 69.2
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 9.6e-254 880.2 618 70.9
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.1e-253 879.0 618 70.4
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 8.2e-253 877.1 641 66.1
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 3.4e-251 871.7 646 65.8
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.7e-250 869.4 611 69.2
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.2e-248 863.2 655 66.4
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 1.6e-248 862.8 616 68.0
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 2.1e-248 862.4 618 67.6
Aqoxy3G02870 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 3.5e-248 861.7 565 71.5
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 3.9e-247 858.2 616 67.9
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 3.3e-246 855.1 559 72.5
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 2.8e-245 852.0 640 65.5
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 1.8e-244 849.4 620 67.9
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 7.7e-243 844.0 614 67.3
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 2.1e-240 835.9 554 72.9
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 3.0e-239 832.0 675 62.5
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 1.2e-235 820.1 627 65.9
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 3.8e-234 815.1 853 52.9
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 8.5e-234 813.9 614 65.0
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 1.2e-232 810.1 616 65.4
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 1.0e-231 807.0 615 65.7
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 6.7e-231 804.3 629 64.1
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 3.8e-226 788.5 494 77.7
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 1.1e-225 786.9 613 63.3
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 5.2e-223 778.1 613 64.4
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 4.4e-222 775.0 616 61.0
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 4.1e-220 768.5 613 61.8
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 6.8e-215 751.1 612 60.9
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 1.3e-213 746.9 636 62.1
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 8.5e-210 734.2 573 62.7
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 4.4e-206 721.8 629 58.2
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 3.3e-201 705.7 626 59.6
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 1.3e-181 640.6 409 75.8
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.7e-181 640.2 574 53.8
CDE07G0939 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 2.2e-181 639.8 410 74.1
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 1.1e-180 637.5 468 68.8
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 1.6e-179 633.6 615 50.7
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.1e-176 623.2 555 54.2
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 1.6e-171 607.1 628 49.4
Nitab4.5_0010520g0020 Nicotiana tabacum HOM05D003203 ORTHO05D003526 3.9e-170 602.4 537 58.5
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 1.2e-166 590.9 622 46.9
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.6e-166 589.7 422 68.5
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 6.0e-163 578.6 395 71.6
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 1.2e-158 564.3 396 71.2
HanXRQChr09g0243461 Helianthus annuus HOM05D003203 ORTHO05D003526 5.8e-150 535.4 392 67.1
AL7G46960 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 7.9e-147 525.0 358 69.8
SpUn0831_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.3e-146 524.2 322 75.8
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.3e-144 517.7 532 48.7
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 5.8e-142 508.8 567 46.9
Actinidia00021 Actinidia chinensis HOM05D003203 ORTHO05D003526 2.5e-140 503.4 325 74.2
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.1e-139 500.4 405 64.4
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 3.3e-137 493.0 622 42.3
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.8e-136 489.2 532 47.2
SHI27629 Sapria himalayana HOM05D003203 ORTHO05D003526 2.3e-130 470.3 334 68.9
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 3.8e-117 426.4 289 73.0
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 7.2e-116 422.2 301 71.1
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 7.2e-116 422.2 301 71.1
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 6.1e-115 419.1 518 47.9
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 2.4e-111 407.1 300 69.0
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.8e-104 382.9 305 61.3
HPP92_010123 Vanilla planifolia HOM05D002295 ORTHO05D002789 3.0e-98 363.6 265 64.9
AagrBONN_evm.TU.Sc2ySwM_246.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.8e-96 357.1 289 60.2
Cpa.g.sc139.68 Carica papaya HOM05D003203 ORTHO05D003526 4.7e-91 339.7 257 66.5
AagrBONN_evm.TU.Sc2ySwM_245.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 6.1e-91 339.3 288 57.6
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 6.1e-91 339.3 288 57.6
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 2.3e-90 337.4 242 69.8
PGSC0003DMG400027376 Solanum tuberosum HOM05D003203 ORTHO05D003526 5.7e-89 332.8 239 66.1
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.2e-86 325.1 288 56.2
Nitab4.5_0001802g0120 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.8e-82 311.2 228 64.9
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 2.3e-82 310.8 207 75.8
HPP92_010182 Vanilla planifolia HOM05D003203 ORTHO05D003526 1.1e-79 302.0 192 72.9
CAN.G352.39 Capsicum annuum HOM05D003203 ORTHO05D003526 1.4e-79 301.6 224 63.4
Lj2A1035T51 Lonicera japonica HOM05D003203 ORTHO05D003526 4.7e-67 260.0 184 67.4
Actinidia15612 Actinidia chinensis HOM05D003203 ORTHO05D003526 8.9e-66 255.8 179 69.3
BcaC07g41967 Brassica carinata HOM05D003203 ORTHO05D003526 2.6e-65 254.2 273 49.8
Sp1g06590 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.0e-61 242.3 188 61.7
FAN21G1129 Fragaria x ananassa HOM05D003203 ORTHO05D003526 4.3e-60 236.9 187 62.6
PSO339G3960 Papaver somniferum HOM05D003203 ORTHO05D003526 3.4e-57 227.3 185 60.0
FAN17G1794 Fragaria x ananassa HOM05D003203 ORTHO05D003526 7.8e-54 216.1 161 62.7
SpUn0840_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.1e-52 212.2 322 39.8
PSO765G0134 Papaver somniferum HOM05D003203 ORTHO05D003526 4.7e-51 206.8 155 65.2
Dinv24671 Davidia involucrata HOM05D003203 ORTHO05D003526 3.4e-49 200.7 136 69.1
Hma1.2p1_0559F.1_g178620 Hydrangea macrophylla HOM05D003203 ORTHO05D003526 2.9e-48 197.6 131 72.5
COL.COLO4_32909 Corchorus olitorius HOM05D003203 ORTHO05D003526 4.2e-47 193.7 115 77.4
SHI27633 Sapria himalayana HOM05D003203 ORTHO05D003526 9.0e-42 176.0 127 64.6
Sp3g30710 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.7e-40 171.8 117 70.1
CARHR204760 Cardamine hirsuta HOM05D003203 ORTHO05D003526 3.5e-38 164.1 166 52.4
TWI75G1314 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 4.6e-38 163.7 134 66.4
Gohir.A03G109301 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.8e-34 151.8 105 74.3
Lj2A1035T52 Lonicera japonica HOM05D003203 ORTHO05D003526 9.0e-34 149.4 94 75.5
Gohir.A08G106700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 2.0e-33 148.3 105 73.3
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.9e-31 141.7 80 83.8
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 6.0e-30 136.7 100 70.0
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 1.0e-29 136.0 101 66.3
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 1.3e-29 135.6 108 67.6
Cc04_g16280 Coffea canephora HOM05D003203 ORTHO05D003526 4.8e-27 127.1 153 48.4
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 8.4e-24 116.3 90 70.0
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 5.1e-13 80.5 59 72.9
RcHm_v2.0_Chr3g0490601 Rosa chinensis HOM05D003203 ORTHO05D003526 4.5e-09 67.4 72 52.8
CSS0004531 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 1.7e-08 65.5 61 52.5
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 4.2e-07 60.8 80 47.5


User provided reference genes

Program Settings