Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1725.7 864 100.0
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1712.6 864 99.0
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1712.6 864 99.0
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1496.5 862 84.5
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1427.9 861 80.7
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1418.3 861 79.0
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1416.7 861 78.7
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1414.8 862 80.5
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1414.4 860 80.0
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1399.0 860 79.2
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1392.9 895 75.8
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1390.9 880 76.7
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1387.5 860 78.3
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1385.9 861 78.7
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1385.2 861 78.2
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1382.1 862 78.5
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1380.5 861 77.4
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1379.0 860 78.8
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1379.0 863 77.2
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1379.0 868 77.8
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1377.8 861 78.2
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1375.1 861 78.3
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1371.7 858 77.2
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1369.8 861 77.9
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1366.7 858 77.9
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1364.0 861 77.6
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1360.5 884 75.9
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1359.4 863 76.7
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1359.4 860 77.2
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1343.6 860 76.3
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1337.4 863 77.1
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1337.4 860 77.2
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1337.0 861 75.3
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1336.2 864 76.7
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1325.1 862 74.7
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1321.6 859 73.7
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1321.2 861 73.9
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1320.1 861 74.9
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1319.3 861 74.8
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1317.8 861 74.6
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1313.9 862 74.5
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1309.7 830 76.1
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1307.0 862 74.6
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1306.6 927 70.9
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1305.4 860 73.7
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1302.0 860 74.2
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1301.2 861 73.9
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1300.0 861 73.5
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1297.3 860 73.3
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1290.8 862 73.0
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1284.2 861 72.8
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1283.9 859 72.8
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1277.3 861 72.7
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1276.9 860 73.1
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1270.8 861 71.8
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1270.0 862 72.4
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1269.6 835 73.9
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1268.8 856 72.1
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1268.1 1005 65.2
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1267.7 862 70.5
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1265.4 862 70.4
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1265.4 879 70.6
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1264.6 861 72.4
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1256.1 861 71.9
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1256.1 860 69.7
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1256.1 861 70.3
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1254.6 861 70.4
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1252.3 861 71.8
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1245.7 861 69.9
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1242.3 861 69.7
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1241.5 864 71.2
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1240.3 923 67.8
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1239.2 858 69.9
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1239.2 861 69.7
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1237.6 861 69.6
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1234.6 861 69.5
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1232.6 861 69.5
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1227.2 858 69.8
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1224.9 861 68.6
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1221.5 908 66.3
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1220.3 871 70.3
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1216.8 857 69.4
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1214.5 862 70.8
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1211.8 867 68.2
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1200.7 861 67.6
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1186.4 948 63.9
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1183.7 890 68.9
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1176.0 861 67.2
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1165.2 876 65.4
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1159.4 785 71.7
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 0.0e+00 1150.2 938 64.9
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1130.2 863 62.9
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 0.0e+00 1123.2 748 75.7
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 0.0e+00 1105.1 890 63.3
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1088.9 693 77.3
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 1.3e-306 1056.2 792 67.8
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 8.4e-301 1036.9 647 77.7
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 3.7e-272 941.8 885 52.1
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.5e-268 929.9 870 52.0
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 5.5e-268 927.9 873 52.6
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 7.5e-265 917.5 623 73.5
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 3.3e-228 795.8 875 49.8
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 3.6e-227 792.3 874 45.1
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 3.6e-219 765.8 561 68.1
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 4.7e-219 765.4 494 76.7
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 2.9e-216 756.1 584 68.2
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 1.9e-204 716.8 955 41.5
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 6.2e-195 685.3 484 71.9
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 1.2e-193 681.0 852 46.6
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 4.2e-183 646.0 381 79.0
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 6.9e-178 628.6 481 62.8
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 1.0e-176 624.8 501 61.7
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 8.5e-176 621.7 442 70.4
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.0e-153 547.4 327 79.8
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 1.1e-138 498.4 614 46.7
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.6e-126 456.8 379 60.9
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 3.1e-93 347.4 236 69.5
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 1.1e-90 339.0 392 50.5
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 2.9e-83 314.3 162 88.9
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 1.3e-72 278.9 694 28.7
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 7.7e-60 236.5 638 27.3
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 6.7e-56 223.4 216 54.6
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 4.0e-40 171.0 115 73.9
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 1.6e-36 159.1 539 25.8
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.8e-35 154.5 125 56.8
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 1.9e-34 152.1 129 55.8
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 1.2e-33 149.4 127 55.9
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 7.5e-31 140.2 94 63.8
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 2.2e-30 138.7 805 21.1
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 4.2e-26 124.4 114 55.3
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 4.1e-21 107.8 129 45.0
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 5.0e-19 100.9 87 55.2
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 8.0e-17 93.6 42 95.2
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.1e-10 73.2 84 47.6
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 8.0e-09 67.0 46 65.2
Sabra16G0154900 Salix brachista HOM05D005600 ORTHO05D349220 5.2e-08 64.3 42 66.7


User provided reference genes

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