Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1724.1 864 100.0
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1724.1 864 100.0
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1712.2 864 99.0
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1490.3 862 84.0
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1426.4 861 80.5
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1416.4 861 79.1
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1412.1 862 80.4
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1409.8 861 78.6
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1409.4 860 79.5
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1393.6 860 78.7
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1387.5 880 76.7
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1385.9 895 75.6
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1384.0 860 77.9
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1382.9 861 78.0
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1380.9 861 78.3
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1378.2 863 77.1
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1377.1 861 77.4
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1376.7 862 78.1
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1375.9 868 77.4
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1374.4 860 78.4
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1372.5 861 77.7
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1369.8 861 77.8
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1368.2 858 77.2
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1364.4 861 77.5
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1362.8 858 77.5
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1358.6 861 77.1
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1357.0 863 76.6
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1356.7 884 75.6
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1354.7 860 76.6
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1339.7 860 75.8
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1337.4 863 76.8
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1334.3 861 75.1
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1332.8 860 76.7
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1332.0 864 76.4
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1320.1 862 74.4
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1319.3 859 73.7
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1317.4 861 74.7
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1316.2 861 73.5
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1314.7 861 74.3
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1312.4 861 74.0
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1309.3 862 74.1
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1308.9 830 76.3
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1304.3 860 73.8
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1302.3 927 70.7
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1300.8 861 73.6
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1299.3 860 74.0
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1298.9 861 73.6
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1298.9 862 74.2
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1292.7 860 72.9
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1286.2 862 72.7
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1279.2 861 72.7
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1278.5 859 72.4
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1271.5 860 72.7
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1269.6 861 72.4
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1268.1 856 72.1
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1267.7 835 73.7
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1263.4 879 70.8
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1261.5 861 71.4
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1260.7 862 72.0
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1260.4 862 70.2
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1258.8 862 70.1
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1258.8 1005 64.8
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1256.9 861 72.0
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1255.0 861 70.5
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1255.0 861 70.3
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1251.9 861 71.5
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1248.8 860 69.3
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1248.0 861 71.4
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1246.1 861 70.0
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1239.9 923 67.9
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1239.6 861 69.8
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1239.2 858 70.0
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1238.0 861 69.7
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1236.1 861 69.5
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1234.9 861 69.6
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1233.8 864 70.8
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1233.0 861 69.6
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1223.8 861 68.6
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1223.4 858 69.5
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1216.1 871 69.9
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1215.3 908 66.1
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1214.5 857 69.3
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1210.7 867 68.2
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1209.5 862 70.4
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1200.7 861 67.7
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1180.2 948 63.7
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1179.1 890 68.4
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1173.3 861 66.9
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1157.5 876 64.7
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1156.0 785 71.7
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 0.0e+00 1144.0 938 64.6
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1125.9 863 63.0
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 0.0e+00 1115.1 748 75.0
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 0.0e+00 1097.8 890 62.9
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1083.9 693 76.8
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 3.9e-306 1054.7 792 67.8
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 3.8e-301 1038.1 648 77.6
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 5.3e-271 937.9 885 52.0
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 6.1e-267 924.5 873 52.5
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.0e-266 923.7 870 51.6
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.2e-264 916.0 623 73.2
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.9e-228 796.6 875 49.8
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 2.0e-225 786.6 874 45.0
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 3.6e-219 765.8 494 76.7
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 6.2e-219 765.0 561 67.9
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 4.9e-216 755.4 584 68.0
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 1.4e-202 710.7 957 41.4
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 3.1e-194 682.9 484 71.7
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 6.9e-194 681.8 852 46.7
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 3.2e-183 646.4 381 79.0
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 3.1e-178 629.8 481 63.0
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 5.9e-177 625.5 501 62.1
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 2.1e-174 617.1 442 69.7
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.5e-151 541.2 327 78.9
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 3.7e-139 500.0 614 47.1
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.8e-126 457.2 379 61.5
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.2e-91 341.3 236 68.6
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 3.8e-91 340.5 392 51.0
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 2.9e-83 314.3 162 89.5
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 2.1e-73 281.6 696 28.7
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 2.2e-59 235.0 638 27.3
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 7.4e-55 219.9 216 53.2
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 1.4e-40 172.6 115 74.8
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 3.5e-36 157.9 539 26.2
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 6.5e-35 153.7 125 56.8
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 1.5e-34 152.5 129 55.8
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 3.2e-34 151.4 127 56.7
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.7e-30 139.0 94 62.8
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 4.8e-30 137.5 798 21.3
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.9e-26 125.6 114 56.1
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.2e-20 106.3 129 44.2
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 2.3e-19 102.1 87 56.3
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 8.0e-17 93.6 42 95.2
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.1e-10 73.2 84 47.6
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 1.1e-08 66.6 46 63.0
Sabra16G0154900 Salix brachista HOM05D005600 ORTHO05D349220 5.2e-08 64.3 42 66.7


User provided reference genes

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