Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G04130 Aquilegia oxysepala HOM05D003015 ORTHO05D003733 1.0e-83 313.2 139 100.0
Aqoxy1G00407 Aquilegia oxysepala HOM05D003015 ORTHO05D003733 7.2e-53 210.7 137 70.8
Aqoxy1G00119 Aquilegia oxysepala HOM05D003015 ORTHO05D077431 1.9e-32 142.9 117 55.6
Aqoxy4G03127 Aquilegia oxysepala HOM05D003015 ORTHO05D003733 1.1e-13 80.5 115 34.8
AagrBONN_evm.TU.Sc2ySwM_117.2733 Anthoceros agrestis HOM05D003015 ORTHO05D003733 6.9e-11 71.2 118 32.2
SMO239G0105 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 1.5e-10 70.1 83 38.6
CBR_g479 Chara braunii HOM05D003015 ORTHO05D003733 2.6e-10 69.3 83 38.6
ATR0584G087 Amborella trichopoda HOM05D003015 ORTHO05D003733 4.4e-10 68.6 83 37.3
ATR0584G244 Amborella trichopoda HOM05D003015 ORTHO05D003733 5.8e-10 68.2 68 41.2
Pp3c2_11360 Physcomitrium patens HOM05D003015 ORTHO05D003733 5.8e-10 68.2 68 41.2
SEGI_12275 Sequoiadendron giganteum HOM05D003015 ORTHO05D003733 5.8e-10 68.2 68 41.2
AL6G17220 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 7.6e-10 67.8 74 37.8
Cfa011635 Carpinus fangiana HOM05D003015 ORTHO05D003733 7.6e-10 67.8 83 37.3
CiPaw.05G153000 Carya illinoinensis HOM05D003015 ORTHO05D003733 7.6e-10 67.8 83 37.3
CiPaw.14G062400 Carya illinoinensis HOM05D003015 ORTHO05D003733 7.6e-10 67.8 83 37.3
Haze_24240 Corylus avellana HOM05D003015 ORTHO05D003733 7.6e-10 67.8 83 37.3
Glyma.13G076300 Glycine max HOM05D003015 ORTHO05D003733 7.6e-10 67.8 93 36.6
Aqoxy1G00721 Aquilegia oxysepala HOM05D003015 ORTHO05D003733 9.9e-10 67.4 68 42.6
COL.COLO4_11589 Corchorus olitorius HOM05D003015 ORTHO05D003733 9.9e-10 67.4 93 35.5
Dinv14472 Davidia involucrata HOM05D003015 ORTHO05D003733 9.9e-10 67.4 102 34.3
TWI31G1171 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 9.9e-10 67.4 83 34.9
TWI75G0619 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 9.9e-10 67.4 83 34.9
AT5G07060 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 1.3e-09 67.0 68 41.2
Duzib147G1171 Durio zibethinus HOM05D003015 ORTHO05D003733 1.3e-09 67.0 100 34.0
QL01p027360 Quercus lobata HOM05D003015 ORTHO05D003733 1.3e-09 67.0 68 41.2
SHI07211 Sapria himalayana HOM05D003015 ORTHO05D003733 1.3e-09 67.0 83 36.1
Hund12125 Selenicereus undatus HOM05D003015 ORTHO05D003733 1.3e-09 67.0 83 37.3
MSTRG.27859 Avicennia marina HOM05D003015 ORTHO05D003733 1.7e-09 66.6 68 41.2
A10p31400 Brassica napus HOM05D003015 ORTHO05D003733 1.7e-09 66.6 91 37.4
Mapoly0103s0034 Marchantia polymorpha HOM05D003015 ORTHO05D003733 1.7e-09 66.6 68 39.7
Nn2g13601 Nelumbo nucifera HOM05D003015 ORTHO05D003733 1.7e-09 66.6 68 39.7
Nn3g19364 Nelumbo nucifera HOM05D003015 ORTHO05D003733 1.7e-09 66.6 68 39.7
Potri.009G041600 Populus trichocarpa HOM05D003015 ORTHO05D003733 1.7e-09 66.6 68 39.7
arahy.Tifrunner.gnm1.ann1.42246I Arachis hypogaea HOM05D003015 ORTHO05D003733 2.2e-09 66.2 68 41.2
BcaC06g32186 Brassica carinata HOM05D003015 ORTHO05D003733 2.2e-09 66.2 106 32.1
Cpa.g.sc112.66 Carica papaya HOM05D003015 ORTHO05D003733 2.2e-09 66.2 83 33.7
ClCG02G014360 Citrullus lanatus HOM05D003015 ORTHO05D003733 2.2e-09 66.2 83 36.1
MELO3C004123.2 Cucumis melo HOM05D003015 ORTHO05D003733 2.2e-09 66.2 83 36.1
CsaV3_2G007640 Cucumis sativus L. HOM05D003015 ORTHO05D003733 2.2e-09 66.2 83 36.1
GSVIVG01024807001 Vitis vinifera HOM05D003015 ORTHO05D003733 2.2e-09 66.2 83 34.9
Atru.chr3.4062 Acer truncatum HOM05D003015 ORTHO05D003733 2.9e-09 65.9 68 39.7
EL10Ac3g06500 Beta vulgaris HOM05D003015 ORTHO05D003733 2.9e-09 65.9 83 36.1
Ciclev10028282m.g Citrus clementina HOM05D003015 ORTHO05D003733 2.9e-09 65.9 68 39.7
Hma1.2p1_0227F.1_g096180 Hydrangea macrophylla HOM05D003015 ORTHO05D003733 2.9e-09 65.9 83 34.9
Manes.02G122600 Manihot esculenta HOM05D003015 ORTHO05D003733 2.9e-09 65.9 83 36.1
Nitab4.5_0000244g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 2.9e-09 65.9 68 39.7
Nitab4.5_0012695g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 2.9e-09 65.9 68 39.7
PSO063G2829 Papaver somniferum HOM05D003015 ORTHO05D003733 2.9e-09 65.9 87 37.9
PSO832G4426 Papaver somniferum HOM05D003015 ORTHO05D003733 2.9e-09 65.9 87 37.9
AL1G17510 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
AT1G07360 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
CSS0018492 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
CSS0039767 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
Carub.0001s0666 Capsella rubella HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
Dinv36322 Davidia involucrata HOM05D003015 ORTHO05D003733 3.8e-09 65.5 83 34.9
Duzib168G1740 Durio zibethinus HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
ECA240G0521 Erigeron canadensis HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
Glyma.02G303600 Glycine max HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
Glyma.14G010200 Glycine max HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
Glyma.20G050200 Glycine max HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
HanXRQChr01g0027201 Helianthus annuus HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
Lsat_1_v5_gn_9_120400 Lactuca sativa HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
Lj2A1075T34 Lonicera japonica HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 38.2
Lj6g0027942 Lotus japonicus HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
Oeu049810.1 Olea europaea HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
PSO339G6468 Papaver somniferum HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 38.2
PSO384G4602 Papaver somniferum HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 38.2
Phvul.008G282900 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
Phvul.L002537 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
Sp1g06110 Schrenkiella parvula HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
PGSC0003DMG400008145 Solanum tuberosum HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
SGA_v2.0_scaffold42G15905 Striga asiatica HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
SGA_v2.0_scaffold8G04438 Striga asiatica HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
THA.LOC104800716 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
VMungo0647G0404 Vigna mungo HOM05D003015 ORTHO05D003733 3.8e-09 65.5 68 39.7
AL4G24300 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 38.2
AT2G29580 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 38.2
MSTRG.5211 Avicennia marina HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 39.7
A04p22550 Brassica napus HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 39.7
CANSAT35G0599 Cannabis sativa HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 38.2
Migut.N00830 Erythranthe guttata HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 39.7
Gohir.A02G151000 Gossypium hirsutum HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 38.2
Gorai.003G031000 Gossypium raimondii HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 38.2
Lsat_1_v5_gn_7_76100 Lactuca sativa HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 39.7
Lj5A264T26 Lonicera japonica HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 39.7
Os06g0170500 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 39.7
Os07g0281000 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 39.7
RcHm_v2.0_Chr1g0337351 Rosa chinensis HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 39.7
Sabra09G0029300 Salix brachista HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 38.2
Thecc.01G073800 Theobroma cacao HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 38.2
TAR636G2105 Trochodendron aralioides HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 38.2
Zm00001eb375430 Zea mays HOM05D003015 ORTHO05D003733 4.9e-09 65.1 68 39.7
BcaC02g08076 Brassica carinata HOM05D003015 ORTHO05D003733 6.4e-09 64.7 68 38.2
C04p58700 Brassica napus HOM05D003015 ORTHO05D003733 6.4e-09 64.7 68 38.2
BolC4t27389H Brassica oleracea HOM05D003015 ORTHO05D003733 6.4e-09 64.7 68 38.2
BraA10t45186Z Brassica rapa HOM05D003015 ORTHO05D003733 6.4e-09 64.7 68 39.7
FAN17G3087 Fragaria x ananassa HOM05D003015 ORTHO05D003733 6.4e-09 64.7 68 38.2
Sabra09G0029100 Salix brachista HOM05D003015 ORTHO05D003733 6.4e-09 64.7 68 38.2
vmacro06938 Vaccinium macrocarpon HOM05D003015 ORTHO05D003733 6.4e-09 64.7 68 38.2
Aa31LG1G6670 Aethionema arabicum HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 39.7
EL10Ac4g08321 Beta vulgaris HOM05D003015 ORTHO05D003733 8.4e-09 64.3 83 34.9
AUR62037628 Chenopodium quinoa HOM05D003015 ORTHO05D003733 8.4e-09 64.3 83 34.9
AUR62041065 Chenopodium quinoa HOM05D003015 ORTHO05D003733 8.4e-09 64.3 83 34.9
Cc02_g23110 Coffea canephora HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
Duzib264G0696 Durio zibethinus HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 36.8
FvH4_4g11590 Fragaria vesca HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
FAN12G3854 Fragaria x ananassa HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
FAN17G0963 Fragaria x ananassa HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
FAN22G0757 Fragaria x ananassa HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
MD16G1006600 Malus domestica HOM05D003015 ORTHO05D003733 8.4e-09 64.3 87 36.8
Nitab4.5_0001618g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
Nitab4.5_0005031g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
Peaxi162Scf00130g01131 Petunia axillaris HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
Prupe.2G214800 Prunus persica HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
RcHm_v2.0_Chr4g0408701 Rosa chinensis HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
Solyc04g017710.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
Solyc10g079190.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
Sopen04g008800 Solanum pennellii HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
Sopen10g029840 Solanum pennellii HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
HPP92_010595 Vanilla planifolia HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 39.7
VMungo0540G1143 Vigna mungo HOM05D003015 ORTHO05D003733 8.4e-09 64.3 68 38.2
Actinidia38840 Actinidia chinensis HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
Ah.04g164350 Amaranthus hybridus HOM05D003015 ORTHO05D003733 1.1e-08 63.9 83 34.9
CDE04G0464 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
Ca_16230_v3 Cicer arietinum L. HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
Eucgr.L01880 Eucalyptus grandis HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
FvH4_4g36530 Fragaria vesca HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
FAN07G1978 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 36.8
FAN12G3049 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
FAN22G2074 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
Lalb_Chr02g0153531 Lupinus albus HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
Lalb_Chr21g0314561 Lupinus albus HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
Medtr3g079200 Medicago truncatula HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
Psat5g112760 Pisum sativum HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
Rhsim13G0073800 Rhododendron simsii HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
RcHm_v2.0_Chr4g0446281 Rosa chinensis HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
Sed0025661 Sechium edule HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
TPR.G14378 Trifolium pratense HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
vmacro02998 Vaccinium macrocarpon HOM05D003015 ORTHO05D003733 1.1e-08 63.9 68 38.2
BcaB03g13399 Brassica carinata HOM05D003015 ORTHO05D003733 1.4e-08 63.5 68 39.7
BcaB06g28319 Brassica carinata HOM05D003015 ORTHO05D003733 1.4e-08 63.5 68 36.8
C08p02980 Brassica napus HOM05D003015 ORTHO05D003733 1.4e-08 63.5 68 39.7
BolC8t47098H Brassica oleracea HOM05D003015 ORTHO05D003733 1.4e-08 63.5 68 39.7
BraA08t35476Z Brassica rapa HOM05D003015 ORTHO05D003733 1.4e-08 63.5 68 39.7
CSS0005232 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 1.4e-08 63.5 68 38.2
DCAR_006673 Daucus carota HOM05D003015 ORTHO05D003733 1.4e-08 63.5 68 38.2
Thhalv10016591m.g Eutrema salsugineum HOM05D003015 ORTHO05D003733 1.9e-08 63.2 68 36.8
FAN06G0288 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.9e-08 63.2 68 39.7
FAN10G3991 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.9e-08 63.2 68 39.7
Sp4g12310 Schrenkiella parvula HOM05D003015 ORTHO05D003733 1.9e-08 63.2 68 36.8
Sc20g0003200 Simmondsia chinensis HOM05D003015 ORTHO05D003733 1.9e-08 63.2 68 38.2
THA.LOC104826299 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 1.9e-08 63.2 68 36.8
CARHR204790 Cardamine hirsuta HOM05D003015 ORTHO05D003733 3.2e-08 62.4 127 29.1
Gohir.D03G029400 Gossypium hirsutum HOM05D003015 ORTHO05D003733 3.2e-08 62.4 68 36.8
BraA04t17800Z Brassica rapa HOM05D003015 ORTHO05D003733 4.2e-08 62.0 68 38.2
FvH4_7g07370 Fragaria vesca HOM05D003015 ORTHO05D003733 4.2e-08 62.0 68 39.7
CARHR007070 Cardamine hirsuta HOM05D003015 ORTHO05D003733 5.4e-08 61.6 68 36.8
CDE02G0190 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 1.6e-07 60.1 68 39.7
C09p72070 Brassica napus HOM05D003015 ORTHO05D003733 6.0e-07 58.2 80 35.0
TAR633G0037 Trochodendron aralioides HOM05D003015 ORTHO05D003733 7.9e-07 57.8 64 35.9
Aqoxy3G02500 Aquilegia oxysepala HOM05D003015 ORTHO05D003733 1.3e-06 57.0 86 34.9
BolC9t59952H Brassica oleracea HOM05D003015 ORTHO05D003733 1.7e-06 56.6 80 33.8
Pp3c14_6200 Physcomitrium patens HOM05D003015 ORTHO05D003733 1.7e-06 56.6 68 38.2
Pp3c14_6210 Physcomitrium patens HOM05D003015 ORTHO05D003733 1.7e-06 56.6 68 38.2
Cfa026156 Carpinus fangiana HOM05D003015 ORTHO05D003733 5.1e-06 55.1 64 35.9
PSO017G6476 Papaver somniferum HOM05D003015 ORTHO05D003733 5.1e-06 55.1 68 32.4
Lalb_Chr06g0171271 Lupinus albus HOM05D003015 ORTHO05D003733 6.6e-06 54.7 67 35.8


User provided reference genes

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