Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 7.5e-92 341.3 294 100.0
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 5.2e-69 265.4 151 88.1
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 8.9e-69 264.6 151 90.1
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 8.9e-69 264.6 151 90.1
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 8.9e-69 264.6 151 90.1
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.5e-68 263.8 151 88.1
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.5e-68 263.8 151 88.1
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.0e-68 263.5 153 89.5
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 5.8e-68 261.9 151 86.8
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.7e-67 260.4 151 87.4
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.7e-67 260.4 151 88.1
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.7e-67 260.4 151 86.8
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 2.2e-67 260.0 151 88.1
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 2.9e-67 259.6 151 86.8
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.9e-67 259.6 151 87.4
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 3.8e-67 259.2 151 86.8
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 3.8e-67 259.2 151 86.8
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 3.8e-67 259.2 151 86.1
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 3.8e-67 259.2 151 88.1
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 6.4e-67 258.5 151 87.4
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 6.4e-67 258.5 147 89.1
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.1e-66 257.7 151 86.1
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 1.1e-66 257.7 151 87.4
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.1e-66 257.7 151 88.1
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 1.1e-66 257.7 151 86.8
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.1e-66 257.7 151 88.1
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 1.1e-66 257.7 151 86.8
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.4e-66 257.3 151 88.1
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.4e-66 257.3 151 87.4
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.4e-66 257.3 151 87.4
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.4e-66 257.3 151 86.8
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.9e-66 256.9 151 86.8
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.9e-66 256.9 151 86.8
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.9e-66 256.9 151 86.8
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.9e-66 256.9 151 86.8
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.9e-66 256.9 151 86.8
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 2.4e-66 256.5 151 86.1
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 3.2e-66 256.1 151 86.1
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.2e-66 256.1 151 85.4
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 3.2e-66 256.1 151 86.8
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 3.2e-66 256.1 151 87.4
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 3.2e-66 256.1 151 86.8
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 3.2e-66 256.1 151 87.4
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.2e-66 256.1 297 85.2
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.2e-66 256.1 297 85.2
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 3.2e-66 256.1 151 86.1
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 4.2e-66 255.8 151 86.1
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 5.4e-66 255.4 151 85.4
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 5.4e-66 255.4 151 85.4
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 5.4e-66 255.4 151 86.1
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 5.4e-66 255.4 151 86.8
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 7.1e-66 255.0 151 85.4
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 7.1e-66 255.0 151 85.4
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 7.1e-66 255.0 151 85.4
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 7.1e-66 255.0 151 86.1
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 9.3e-66 254.6 151 86.1
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 9.3e-66 254.6 148 87.2
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 9.3e-66 254.6 148 87.2
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 9.3e-66 254.6 151 85.4
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 9.3e-66 254.6 149 88.6
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 9.3e-66 254.6 151 85.4
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.6e-65 253.8 151 84.8
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 2.1e-65 253.4 151 86.1
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 2.7e-65 253.1 151 84.8
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 3.5e-65 252.7 152 87.5
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 4.6e-65 252.3 151 84.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 4.6e-65 252.3 151 84.1
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 4.6e-65 252.3 147 87.1
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 4.6e-65 252.3 151 84.1
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 6.0e-65 251.9 151 86.8
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 6.0e-65 251.9 151 83.4
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 7.8e-65 251.5 151 86.1
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 7.8e-65 251.5 151 83.4
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 7.8e-65 251.5 151 83.4
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.0e-64 251.1 148 86.5
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.0e-64 251.1 151 84.1
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.3e-64 250.8 151 83.4
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.3e-64 250.8 152 86.8
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.7e-64 250.4 151 84.1
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 2.3e-64 250.0 152 84.9
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 2.3e-64 250.0 151 84.1
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.9e-64 249.2 150 84.7
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 6.6e-64 248.4 152 84.9
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 6.6e-64 248.4 151 83.4
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.1e-63 247.7 151 84.1
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.5e-63 247.3 151 84.1
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.5e-63 247.3 151 82.8
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.5e-63 247.3 155 81.9
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.9e-63 246.9 151 85.4
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 2.5e-63 246.5 145 86.2
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 5.6e-63 245.4 151 82.8
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 5.6e-63 245.4 270 55.6
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 7.3e-63 245.0 151 83.4
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 7.3e-63 245.0 152 82.9
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 9.6e-63 244.6 151 83.4
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.6e-62 243.8 152 82.2
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.6e-62 243.8 153 82.4
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.6e-62 243.8 153 82.4
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.6e-62 243.8 153 82.4
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 2.1e-62 243.4 152 82.2
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.6e-62 242.7 151 81.5
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.6e-62 242.7 151 82.8
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.6e-62 242.7 151 82.8
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 4.8e-62 242.3 152 82.2
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 6.2e-62 241.9 149 84.6
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 8.1e-62 241.5 152 84.2
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.1e-61 241.1 152 84.2
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.4e-61 240.7 152 84.2
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 2.4e-61 240.0 151 82.1
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.4e-61 240.0 151 82.1
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.4e-61 240.0 152 82.9
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 3.1e-61 239.6 151 81.5
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.1e-61 239.6 151 81.5
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.1e-61 239.6 151 81.5
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 6.9e-61 238.4 149 84.6
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 9.0e-61 238.0 151 81.5
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.6e-60 236.5 151 83.4
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 2.6e-60 236.5 154 80.5
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.7e-59 233.8 151 82.1
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 2.9e-59 233.0 143 83.2
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 4.9e-59 232.3 151 79.5
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.4e-59 231.9 147 80.3
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 8.4e-59 231.5 151 81.5
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 1.4e-58 230.7 152 81.6
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.9e-58 230.3 146 80.1
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 2.4e-58 229.9 151 78.1
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 7.1e-58 228.4 151 77.5
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.6e-57 227.3 132 89.4
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.8e-56 223.8 151 78.8
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.9e-55 220.3 156 75.6
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 4.3e-55 219.2 144 77.1
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 5.6e-55 218.8 152 78.3
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 2.8e-54 216.5 151 74.2
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 2.0e-52 210.3 151 72.2
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 6.4e-51 205.3 138 75.4
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 1.1e-50 204.5 151 74.8
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 1.1e-50 204.5 151 74.8
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.3e-48 196.8 236 64.4
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 6.7e-48 195.3 120 82.5
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.1e-47 194.5 125 80.0
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.7e-46 189.5 151 70.2
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 1.8e-45 187.2 121 80.2
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 2.4e-45 186.8 121 80.2
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.2e-44 184.5 148 64.2
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 5.8e-44 182.2 110 84.5
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 1.2e-41 174.5 151 64.2
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 5.1e-40 169.1 150 62.0
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 6.7e-40 168.7 126 69.0
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 5.3e-37 159.1 150 60.7
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 1.3e-35 154.5 95 83.2
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 1.2e-33 147.9 94 78.7
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 7.9e-33 145.2 111 69.4
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.4e-29 133.7 148 54.1
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.4e-29 133.7 148 54.1
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.4e-29 133.7 148 54.1
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.0e-28 130.6 148 53.4
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 2.2e-27 127.1 140 51.4
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.9e-24 116.3 142 53.5
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 1.6e-17 94.4 53 83.0
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 7.0e-13 79.0 42 88.1
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 9.1e-13 78.6 52 76.9
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.2e-12 78.2 67 64.2
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 1.6e-12 77.8 40 92.5
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 9.7e-07 58.5 67 55.2


User provided reference genes

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