Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.0e-90 335.9 281 100.0
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.8e-69 265.8 153 89.5
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.6e-67 259.2 153 85.0
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.6e-67 259.2 153 85.0
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 3.6e-67 259.2 229 69.9
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.0e-66 257.7 229 69.4
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 1.0e-66 257.7 153 84.3
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.0e-66 257.7 153 84.3
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.4e-66 257.3 153 85.0
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.4e-66 257.3 153 85.0
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 3.0e-66 256.1 153 83.7
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 4.0e-66 255.8 153 83.7
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 5.2e-66 255.4 153 83.0
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 6.8e-66 255.0 153 83.0
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 8.9e-66 254.6 153 83.0
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 8.9e-66 254.6 229 73.8
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 8.9e-66 254.6 153 83.7
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.2e-65 254.2 229 68.1
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.5e-65 253.8 153 84.3
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 2.0e-65 253.4 153 83.0
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 2.6e-65 253.1 153 83.0
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 2.6e-65 253.1 153 83.7
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.6e-65 253.1 153 85.0
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.4e-65 252.7 153 81.7
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 4.4e-65 252.3 153 83.0
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 4.4e-65 252.3 153 83.0
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 4.4e-65 252.3 153 82.4
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 4.4e-65 252.3 153 82.4
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 5.7e-65 251.9 153 82.4
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 5.7e-65 251.9 153 82.4
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 7.5e-65 251.5 153 82.4
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 9.8e-65 251.1 153 81.0
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 9.8e-65 251.1 153 82.4
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 9.8e-65 251.1 153 82.4
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 9.8e-65 251.1 153 83.7
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 9.8e-65 251.1 153 82.4
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 9.8e-65 251.1 153 82.4
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 9.8e-65 251.1 153 81.7
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 9.8e-65 251.1 153 83.0
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 9.8e-65 251.1 153 82.4
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 9.8e-65 251.1 153 82.4
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 9.8e-65 251.1 153 81.0
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.3e-64 250.8 153 82.4
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.3e-64 250.8 151 83.4
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 1.3e-64 250.8 153 82.4
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 1.3e-64 250.8 153 82.4
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.7e-64 250.4 153 81.7
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.7e-64 250.4 153 80.4
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.7e-64 250.4 153 81.7
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 2.2e-64 250.0 153 81.7
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.2e-64 250.0 153 82.4
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 2.2e-64 250.0 153 83.0
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 2.2e-64 250.0 153 82.4
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 2.2e-64 250.0 153 83.0
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 2.2e-64 250.0 153 81.0
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 2.2e-64 250.0 153 81.0
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 2.2e-64 250.0 154 81.2
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 2.8e-64 249.6 153 81.0
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 2.8e-64 249.6 153 81.0
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 2.8e-64 249.6 153 81.7
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 3.7e-64 249.2 153 81.0
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 3.7e-64 249.2 153 81.0
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 3.7e-64 249.2 153 81.0
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 3.7e-64 249.2 229 72.1
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 3.7e-64 249.2 153 81.0
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 3.7e-64 249.2 153 81.0
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 4.9e-64 248.8 150 82.7
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 6.3e-64 248.4 153 82.4
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 6.3e-64 248.4 153 81.0
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 6.3e-64 248.4 153 81.7
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.1e-63 247.7 153 81.0
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.1e-63 247.7 153 80.4
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 1.1e-63 247.7 153 81.7
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.1e-63 247.7 153 81.0
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-63 247.3 153 81.7
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.4e-63 247.3 154 83.1
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.4e-63 247.3 153 81.0
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.8e-63 246.9 153 81.0
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.4e-63 246.5 154 81.2
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 3.1e-63 246.1 153 81.7
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.4e-63 245.4 154 82.5
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 5.4e-63 245.4 153 81.0
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 7.0e-63 245.0 152 81.6
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 7.0e-63 245.0 150 82.0
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 7.0e-63 245.0 153 79.7
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-62 244.2 154 80.5
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.6e-62 243.8 153 80.4
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.0e-62 243.4 153 79.7
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.5e-62 242.7 153 80.4
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.5e-62 242.7 153 80.4
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 5.9e-62 241.9 153 78.4
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 7.8e-62 241.5 153 79.7
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 7.8e-62 241.5 154 78.6
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.0e-61 241.1 152 82.2
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.3e-61 240.7 153 78.4
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 1.7e-61 240.4 147 81.6
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.7e-61 240.4 154 77.9
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 2.3e-61 240.0 154 77.9
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 5.0e-61 238.8 154 77.9
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.6e-61 238.4 153 79.1
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 8.6e-61 238.0 153 77.1
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.1e-60 237.7 151 79.5
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.9e-60 236.9 153 79.1
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.9e-60 236.9 155 76.8
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.9e-60 236.9 155 76.8
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.9e-60 236.9 155 76.8
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 5.6e-60 235.3 153 79.1
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 7.3e-60 235.0 153 77.1
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 7.3e-60 235.0 153 79.1
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 9.5e-60 234.6 153 79.1
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 2.1e-59 233.4 153 77.1
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 2.1e-59 233.4 153 75.8
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 2.8e-59 233.0 153 77.8
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.8e-59 233.0 153 77.8
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.6e-59 232.6 153 77.1
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.6e-59 232.6 153 77.1
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 3.6e-59 232.6 151 78.8
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 8.0e-59 231.5 153 77.1
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 2.3e-58 229.9 146 78.8
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.2e-57 227.6 149 75.8
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.5e-57 227.3 153 77.1
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 2.0e-57 226.9 153 74.5
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 2.6e-57 226.5 153 77.8
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 5.7e-57 225.3 153 73.9
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 7.5e-57 224.9 149 75.8
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 7.5e-57 224.9 151 76.8
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 2.9e-56 223.0 154 75.3
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 4.9e-56 222.2 155 74.2
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 7.0e-55 218.4 147 74.1
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.2e-54 217.6 154 72.7
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.2e-54 217.6 135 81.5
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 2.3e-53 213.4 153 72.5
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 8.6e-53 211.5 151 71.5
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 7.3e-52 208.4 154 71.4
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 9.5e-52 208.0 141 73.8
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.0e-50 202.6 155 71.0
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 8.3e-48 194.9 153 68.0
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 8.3e-48 194.9 153 68.0
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 9.2e-47 191.4 122 78.7
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 3.0e-45 186.4 127 74.0
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 2.5e-44 183.3 151 62.9
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 2.8e-43 179.9 113 79.6
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.6e-43 179.5 153 64.7
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 6.2e-43 178.7 123 74.0
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 1.1e-42 177.9 123 73.2
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 2.0e-41 173.7 129 68.2
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.1e-39 167.9 153 59.5
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 2.4e-39 166.8 154 60.4
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 1.1e-36 157.9 153 58.8
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 6.2e-35 152.1 98 77.6
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 2.9e-32 143.3 96 71.9
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 2.4e-31 140.2 106 68.9
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.0e-29 133.3 151 50.3
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.0e-29 133.3 151 50.3
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.0e-29 133.3 151 50.3
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.6e-28 129.0 151 49.7
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.2e-27 125.6 145 55.2
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 5.2e-26 122.5 143 47.6
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 4.5e-17 92.8 53 79.2
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.5e-12 77.8 40 92.5
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 1.9e-12 77.4 41 87.8
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 2.5e-12 77.0 40 90.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.7e-11 73.2 55 65.5
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 1.1e-07 61.6 67 56.7


User provided reference genes

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