Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 3.5e-200 701.4 356 100.0
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 4.0e-172 608.2 365 84.7
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 1.2e-171 606.7 365 84.4
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 5.6e-166 587.8 360 83.6
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 1.1e-164 583.6 360 81.9
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 1.8e-164 582.8 360 82.8
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 9.9e-163 577.0 360 81.9
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 1.4e-153 546.6 359 77.7
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 3.5e-152 542.0 361 74.5
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 1.3e-151 540.0 360 75.3
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 1.3e-151 540.0 371 73.6
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 2.3e-151 539.3 360 74.4
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 3.9e-151 538.5 360 75.0
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 5.1e-151 538.1 371 73.6
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 3.3e-150 535.4 360 76.1
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 4.3e-150 535.0 371 73.3
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 7.3e-150 534.3 359 74.4
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 7.3e-150 534.3 360 74.4
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 9.6e-150 533.9 360 74.4
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 9.6e-150 533.9 364 73.1
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 1.6e-149 533.1 372 73.4
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 2.1e-149 532.7 369 72.6
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 4.8e-149 531.6 363 73.0
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 6.2e-149 531.2 366 72.1
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.1e-148 530.4 359 72.1
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.8e-148 529.6 360 73.9
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 5.3e-148 528.1 366 71.9
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 5.3e-148 528.1 366 71.9
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 6.9e-148 527.7 366 71.9
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 6.9e-148 527.7 366 71.9
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 9.0e-148 527.3 366 71.6
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 1.5e-147 526.6 359 72.4
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 1.5e-147 526.6 375 71.5
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 2.0e-147 526.2 360 73.3
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 2.6e-147 525.8 360 73.9
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 2.6e-147 525.8 365 72.3
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 4.4e-147 525.0 361 74.5
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 4.4e-147 525.0 375 69.9
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 4.4e-147 525.0 359 73.0
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 7.6e-147 524.2 371 70.6
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 1.7e-146 523.1 371 71.7
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 2.2e-146 522.7 363 71.6
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 3.8e-146 521.9 371 70.4
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 3.8e-146 521.9 376 71.3
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 4.2e-145 518.5 369 72.1
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 5.4e-145 518.1 360 71.9
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 7.1e-145 517.7 375 70.1
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 9.3e-145 517.3 372 69.6
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 1.2e-144 516.9 372 69.9
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 2.1e-144 516.2 363 70.2
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 2.1e-144 516.2 363 70.2
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 2.1e-144 516.2 375 70.7
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 3.5e-144 515.4 364 71.2
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 2.3e-143 512.7 377 70.6
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 3.0e-143 512.3 375 69.6
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 3.0e-143 512.3 369 70.7
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 8.7e-143 510.8 366 69.4
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 1.5e-142 510.0 375 68.5
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.9e-142 509.6 360 70.6
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 4.3e-142 508.4 375 68.3
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 5.6e-142 508.1 382 68.8
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 2.8e-141 505.8 363 70.2
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 1.4e-140 503.4 369 71.0
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 1.4e-140 503.4 361 71.2
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 4.0e-140 501.9 352 71.3
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 5.3e-140 501.5 359 71.9
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 7.6e-139 497.7 367 68.1
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 7.6e-139 497.7 394 66.5
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 4.2e-137 491.9 379 64.9
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 1.2e-136 490.3 365 67.4
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-136 490.0 382 65.4
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 2.1e-136 489.6 364 68.1
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 2.1e-136 489.6 382 65.4
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 7.9e-136 487.6 360 70.0
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 5.1e-135 485.0 361 68.4
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 8.7e-135 484.2 365 67.7
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 1.1e-134 483.8 380 64.7
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 3.3e-134 482.3 365 65.8
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 4.3e-134 481.9 374 64.4
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 4.3e-134 481.9 361 66.2
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 7.4e-134 481.1 363 67.2
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 8.1e-133 477.6 376 64.4
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 1.8e-132 476.5 362 66.3
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 3.1e-132 475.7 362 66.9
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 1.5e-131 473.4 361 65.9
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 2.0e-131 473.0 361 64.8
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 1.7e-130 469.9 362 64.6
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 3.8e-130 468.8 361 64.3
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 1.4e-129 466.8 363 65.0
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 3.2e-129 465.7 376 63.8
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 3.2e-129 465.7 362 66.6
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 5.5e-129 464.9 363 66.4
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 7.1e-129 464.5 363 64.2
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 2.1e-128 463.0 362 65.2
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 2.7e-128 462.6 353 65.2
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 3.5e-128 462.2 361 65.1
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 6.0e-128 461.5 313 73.8
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.9e-127 458.8 356 66.0
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 5.7e-126 454.9 308 75.3
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 1.3e-125 453.8 362 65.2
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 6.2e-125 451.4 362 64.1
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 3.1e-124 449.1 362 65.7
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 6.9e-124 448.0 361 64.0
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 6.9e-124 448.0 362 63.3
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 4.5e-123 445.3 357 62.7
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 5.8e-123 444.9 363 63.6
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 1.7e-122 443.4 362 63.8
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 8.4e-122 441.0 362 61.9
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 3.2e-121 439.1 378 59.8
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-120 436.8 341 65.4
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 2.1e-120 436.4 360 61.7
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 1.6e-117 426.8 347 65.7
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 6.9e-116 421.4 387 56.6
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 1.3e-114 417.2 290 73.8
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.2e-114 416.4 313 68.4
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 2.9e-114 416.0 353 61.8
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 3.8e-114 415.6 314 69.4
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.3e-106 390.6 357 57.1
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 5.5e-105 385.2 371 56.9
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 2.4e-100 369.8 356 53.1
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 5.0e-98 362.1 270 66.3
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 2.6e-94 349.7 304 59.2
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 3.2e-89 332.8 295 58.3
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 9.4e-81 304.7 191 80.6
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.5e-70 268.5 150 88.0
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 2.9e-69 266.5 161 82.0
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 3.5e-67 259.6 259 50.2
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 3.0e-66 256.5 359 40.7
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 1.2e-64 251.1 258 54.7
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 2.3e-58 230.3 327 45.3
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 4.4e-54 216.1 331 37.2
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 1.5e-49 201.1 204 50.5
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 7.3e-49 198.7 145 70.3
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 6.2e-48 195.7 180 53.9
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 2.2e-45 187.2 229 45.4
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 8.4e-45 185.3 164 59.8
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.3e-42 177.9 172 56.4
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.1e-39 168.3 157 54.1
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 1.2e-35 154.8 133 64.7
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 2.7e-35 153.7 133 63.9
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.4e-31 140.6 121 62.8
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 3.1e-31 140.2 81 86.4
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 9.6e-25 118.6 93 61.3
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.3e-24 118.2 112 53.6
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 5.3e-23 112.8 84 67.9
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 2.9e-21 107.1 171 40.4
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.8e-15 87.8 51 80.4
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.8e-15 87.8 51 80.4
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 2.6e-14 84.0 98 45.9


User provided reference genes

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