Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 1.3e-194 683.3 479 100.0
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 6.2e-128 461.8 330 73.6
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 5.3e-127 458.8 330 73.3
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 9.9e-126 454.5 330 73.0
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 3.1e-119 433.0 356 63.8
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 2.0e-118 430.3 330 67.6
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 1.0e-117 427.9 331 67.4
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 1.3e-117 427.6 330 68.5
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 1.3e-117 427.6 330 68.2
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 1.9e-116 423.7 357 64.1
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 9.3e-116 421.4 355 64.8
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 2.1e-115 420.2 330 67.9
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 2.7e-115 419.9 330 68.5
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 2.7e-115 419.9 330 67.3
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 4.6e-115 419.1 330 65.8
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 6.0e-115 418.7 367 62.1
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 6.0e-115 418.7 337 65.6
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 1.8e-114 417.2 330 67.9
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 3.9e-114 416.0 330 66.4
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 5.1e-114 415.6 330 67.0
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 5.1e-114 415.6 330 67.0
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 5.1e-114 415.6 337 65.0
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 8.7e-114 414.8 330 66.7
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 1.1e-113 414.5 335 64.5
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 1.1e-113 414.5 326 66.9
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 4.3e-113 412.5 330 67.0
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 7.4e-113 411.8 330 66.4
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 7.4e-113 411.8 330 66.4
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 1.6e-112 410.6 330 66.7
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 2.8e-112 409.8 330 66.4
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 1.4e-111 407.5 330 66.1
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 1.8e-111 407.1 330 65.8
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 2.4e-111 406.8 334 65.3
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 2.4e-111 406.8 334 65.3
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 2.4e-111 406.8 330 65.8
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 4.1e-111 406.0 327 66.7
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 4.1e-111 406.0 330 67.3
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 5.3e-111 405.6 327 64.8
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 5.3e-111 405.6 330 65.8
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 9.0e-111 404.8 334 65.9
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 9.0e-111 404.8 334 65.3
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 9.0e-111 404.8 330 63.3
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 9.0e-111 404.8 330 65.2
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 9.0e-111 404.8 346 65.3
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 1.5e-110 404.1 329 66.6
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 2.0e-110 403.7 330 65.2
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 2.6e-110 403.3 327 66.1
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 2.6e-110 403.3 330 64.5
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 2.6e-110 403.3 327 66.4
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 2.6e-110 403.3 327 65.7
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 2.6e-110 403.3 330 65.5
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 3.4e-110 402.9 326 65.3
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 3.4e-110 402.9 330 65.2
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 5.9e-110 402.1 327 65.7
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 5.9e-110 402.1 334 64.7
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 7.6e-110 401.7 330 64.5
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 7.6e-110 401.7 330 63.9
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 2.2e-109 400.2 330 64.5
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 3.8e-109 399.4 330 64.8
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 3.8e-109 399.4 330 64.8
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 3.8e-109 399.4 277 73.6
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 6.5e-109 398.7 327 63.9
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 1.4e-108 397.5 330 64.8
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 4.2e-108 396.0 330 62.4
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 4.2e-108 396.0 332 64.2
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 4.2e-108 396.0 408 55.4
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 2.7e-107 393.3 327 63.6
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 1.8e-106 390.6 350 61.4
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 3.0e-106 389.8 330 62.1
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 3.0e-106 389.8 266 74.1
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 5.7e-105 385.6 274 71.5
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.2e-104 383.6 331 63.1
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 2.8e-104 383.3 328 59.1
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 2.8e-104 383.3 330 61.2
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 6.3e-104 382.1 357 58.3
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.8e-103 380.6 333 63.4
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 5.3e-103 379.0 331 60.4
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 1.5e-102 377.5 331 62.2
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 2.6e-102 376.7 327 58.1
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 5.9e-102 375.6 331 61.3
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 1.0e-101 374.8 308 64.6
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 1.9e-100 370.5 338 59.5
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.9e-100 370.5 341 58.7
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 7.2e-100 368.6 269 70.6
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 1.8e-98 364.0 332 58.7
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 6.7e-98 362.1 357 56.3
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 2.0e-97 360.5 319 58.6
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.7e-96 357.5 330 57.0
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 2.8e-96 356.7 278 67.3
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 4.8e-96 355.9 321 59.5
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 4.1e-95 352.8 337 57.0
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 5.3e-95 352.4 411 49.6
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 6.9e-95 352.1 325 59.1
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 8.8e-90 335.1 271 66.8
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 2.6e-89 333.6 239 72.4
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 4.4e-89 332.8 239 72.0
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 3.2e-84 316.6 273 60.4
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 3.6e-83 313.2 330 49.4
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.6e-78 297.7 322 47.5
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 1.6e-78 297.7 337 49.6
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 4.5e-78 296.2 284 58.5
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 1.0e-77 295.0 253 64.8
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 3.8e-77 293.1 253 62.1
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 1.9e-76 290.8 317 46.4
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 2.7e-70 270.4 217 66.4
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 4.0e-66 256.5 322 42.5
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 2.9e-61 240.4 332 41.3
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 1.0e-58 231.9 201 63.2
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 2.0e-57 227.6 264 42.8
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 2.9e-56 223.8 279 42.3
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 1.2e-54 218.4 191 62.8
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 6.0e-46 189.5 358 31.3
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 3.9e-45 186.8 130 73.8
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 4.0e-42 176.8 131 66.4
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 2.2e-32 144.4 145 57.9
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 6.4e-32 142.9 93 72.0
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 7.8e-30 136.0 326 34.0
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 6.6e-29 132.9 118 61.9
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 1.5e-28 131.7 77 81.8
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 2.8e-27 127.5 76 78.9
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 3.6e-27 127.1 91 65.9
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 2.0e-25 121.3 77 75.3
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 7.6e-17 92.8 118 45.8
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 3.5e-14 84.0 154 39.0
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.0e-13 82.4 96 52.1
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 5.1e-13 80.1 79 54.4
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 4.8e-11 73.6 90 45.6
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 3.1e-10 70.9 54 66.7
Cre08.g376500 Chlamydomonas reinhardtii HOM05D016293 ORTHO05D018978 1.1e-07 62.4 83 37.3
Mapoly0071s0039 Marchantia polymorpha HOM05D016293 ORTHO05D018978 7.1e-07 59.7 89 33.7
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 2.1e-06 58.2 123 35.0
Pp3c21_8660 Physcomitrium patens HOM05D016293 ORTHO05D018978 2.7e-06 57.8 91 34.1


User provided reference genes

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