Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 7.8e-123 444.1 278 100.0
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.6e-86 322.8 292 79.1
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.1e-84 317.4 292 78.8
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.0e-82 310.8 287 74.6
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.0e-82 310.8 286 71.7
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.3e-82 310.5 247 77.7
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 3.3e-81 305.8 289 73.7
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 1.3e-80 303.9 287 73.5
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 2.8e-80 302.8 282 72.3
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 3.7e-80 302.4 287 72.8
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 6.2e-80 301.6 243 73.7
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 8.4e-77 291.2 292 71.2
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.2e-75 287.3 244 70.1
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.8e-74 283.5 293 70.6
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.9e-73 280.0 285 71.6
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 4.3e-73 278.9 294 73.5
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 2.2e-72 276.6 229 70.7
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 2.2e-72 276.6 229 70.7
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.4e-71 273.9 282 70.2
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 5.3e-71 271.9 186 78.5
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 5.3e-71 271.9 246 68.3
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.9e-71 271.6 284 65.8
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.5e-70 270.4 297 72.4
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 2.6e-70 269.6 215 72.1
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.4e-70 269.2 227 68.7
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 4.5e-70 268.9 279 68.5
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.5e-70 268.9 283 65.7
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 5.9e-70 268.5 293 67.2
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 5.9e-70 268.5 251 69.7
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.9e-70 268.5 251 69.7
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 5.9e-70 268.5 286 66.8
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 7.7e-70 268.1 283 72.4
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 7.7e-70 268.1 162 84.6
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.7e-69 266.9 193 76.7
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.9e-69 266.2 233 71.7
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 2.9e-69 266.2 248 67.3
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.8e-69 265.8 242 66.9
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 5.0e-69 265.4 168 83.9
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 6.5e-69 265.0 249 71.1
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 8.5e-69 264.6 252 66.7
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 8.5e-69 264.6 209 74.6
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 8.5e-69 264.6 183 77.6
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.9e-68 263.5 242 66.5
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 4.2e-68 262.3 230 67.0
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 4.2e-68 262.3 292 66.8
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.5e-68 261.9 286 65.0
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.5e-68 261.9 224 71.4
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 5.5e-68 261.9 288 67.4
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 7.2e-68 261.5 293 69.6
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.2e-67 260.8 290 68.6
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 2.1e-67 260.0 163 82.2
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 2.7e-67 259.6 194 76.8
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 2.7e-67 259.6 194 76.8
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.0e-66 257.7 168 82.7
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.0e-66 256.1 242 65.3
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 3.9e-66 255.8 240 68.8
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 2.5e-65 253.1 234 66.7
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 5.7e-65 251.9 195 72.8
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 7.4e-65 251.5 246 65.0
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 9.7e-65 251.1 209 69.9
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 9.7e-65 251.1 290 65.5
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.3e-64 250.8 232 66.4
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 1.3e-64 250.8 208 71.6
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.7e-64 250.4 255 63.5
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 2.8e-64 249.6 176 77.3
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 3.7e-64 249.2 209 69.4
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 3.7e-64 249.2 209 69.4
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 3.7e-64 249.2 238 65.5
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 6.3e-64 248.4 180 75.0
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.1e-63 247.7 162 79.6
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.4e-63 247.3 208 71.2
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.4e-63 247.3 227 66.5
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.8e-63 246.9 183 73.8
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.8e-63 246.9 193 72.0
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.8e-63 246.9 154 82.5
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.4e-63 246.5 202 69.3
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 4.1e-63 245.7 209 68.9
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 4.1e-63 245.7 209 68.9
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 5.3e-63 245.4 172 77.3
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 9.1e-63 244.6 193 72.0
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.2e-62 244.2 151 84.1
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.5e-62 243.8 177 75.7
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 2.0e-62 243.4 168 82.1
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 2.6e-62 243.0 233 64.8
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.4e-62 242.7 234 65.0
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 4.5e-62 242.3 209 68.4
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 4.5e-62 242.3 150 84.0
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 5.9e-62 241.9 246 60.2
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 7.7e-62 241.5 151 82.8
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 1.0e-61 241.1 189 71.4
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 1.0e-61 241.1 274 63.5
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 1.0e-61 241.1 281 67.3
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 1.0e-61 241.1 281 67.3
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.3e-61 240.7 199 69.8
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.7e-61 240.4 193 69.4
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 2.2e-61 240.0 203 70.4
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 6.5e-61 238.4 231 66.2
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 8.5e-61 238.0 199 70.4
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 8.5e-61 238.0 199 70.4
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 1.1e-60 237.7 203 74.4
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.4e-60 237.3 234 63.7
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 1.9e-60 236.9 242 61.6
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 1.9e-60 236.9 173 73.4
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 4.2e-60 235.7 242 62.0
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 5.5e-60 235.3 152 81.6
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 5.5e-60 235.3 240 60.4
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 9.4e-60 234.6 233 63.9
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.2e-59 234.2 219 63.0
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 1.6e-59 233.8 241 61.4
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 3.6e-59 232.6 240 64.2
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 4.7e-59 232.3 282 61.7
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 6.1e-59 231.9 151 81.5
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 7.9e-59 231.5 251 66.1
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.8e-58 230.3 152 78.3
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 2.3e-58 229.9 145 82.1
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 1.1e-57 227.6 243 60.1
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 1.5e-57 227.3 151 88.7
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 4.4e-57 225.7 280 68.6
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 7.4e-57 224.9 286 61.2
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 9.7e-57 224.6 153 77.8
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.2e-56 223.4 234 63.7
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.8e-56 222.2 153 77.1
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.8e-56 222.2 153 77.1
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.4e-55 220.7 285 62.5
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.4e-55 220.7 231 62.3
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.4e-55 220.7 231 62.3
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 2.4e-55 219.9 232 62.9
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 9.1e-55 218.0 236 59.7
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.5e-54 217.2 291 65.6
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 2.6e-54 216.5 280 60.4
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 7.7e-54 214.9 141 78.0
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.2e-53 213.4 278 61.5
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 9.4e-52 208.0 239 54.8
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 4.7e-51 205.7 215 60.5
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.0e-50 204.5 135 77.8
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.8e-50 203.8 194 72.2
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 5.2e-50 202.2 181 67.4
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 8.8e-50 201.4 239 56.5
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.1e-47 194.5 165 70.3
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 9.1e-47 191.4 202 63.9
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 3.5e-46 189.5 199 63.8
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 4.5e-46 189.1 193 60.6
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 6.5e-45 185.3 123 78.0
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.1e-44 184.5 148 71.6
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 5.5e-44 182.2 159 60.4
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 7.5e-41 171.8 249 51.8
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 2.2e-40 170.2 151 60.3
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.8e-39 167.2 217 53.9
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 3.8e-37 159.5 123 66.7
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.2e-34 149.1 208 54.8
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.2e-34 149.1 208 54.8
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 2.0e-33 147.1 91 80.2
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 9.8e-33 144.8 206 53.9
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 9.1e-31 138.3 202 50.5
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.6e-30 137.5 87 80.5
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.5e-30 136.3 261 47.1
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 2.3e-26 123.6 137 51.8
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 5.8e-17 92.4 209 38.8
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.3e-16 91.3 132 56.1
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 2.0e-14 84.0 83 63.9
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 1.0e-13 81.6 66 68.2
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 8.6e-13 78.6 207 35.7
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 8.6e-13 78.6 50 78.0
CSS0022278 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.5e-12 77.0 59 74.6


User provided reference genes

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