Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 3.4e-214 748.0 377 100.0
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 1.7e-173 612.8 383 82.8
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 6.5e-173 610.9 385 82.3
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 1.1e-172 610.1 385 81.8
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 9.4e-172 607.1 381 82.2
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 1.6e-171 606.3 385 81.6
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 1.0e-170 603.6 385 80.5
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 4.0e-170 601.7 386 80.3
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 1.7e-168 596.3 384 80.5
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 1.7e-168 596.3 378 81.2
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 1.7e-168 596.3 378 81.2
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 2.2e-168 595.9 384 80.5
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 4.1e-167 591.7 384 79.7
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 5.4e-167 591.3 384 79.7
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 5.4e-167 591.3 384 79.7
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 1.2e-163 580.1 385 79.0
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 8.9e-154 547.4 388 73.5
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.4e-151 540.0 382 72.8
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 3.0e-149 532.3 382 71.7
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 3.3e-148 528.9 382 71.7
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 4.3e-148 528.5 385 71.2
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 3.6e-147 525.4 382 69.9
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 4.7e-147 525.0 383 71.5
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 6.2e-147 524.6 383 71.5
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 8.0e-147 524.2 381 71.7
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 1.0e-146 523.9 383 71.5
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 6.8e-146 521.2 383 71.3
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 8.9e-146 520.8 382 70.7
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 3.4e-145 518.8 382 70.7
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 5.8e-145 518.1 382 68.8
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 2.2e-144 516.2 383 71.8
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 3.7e-144 515.4 383 68.9
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 4.9e-144 515.0 382 69.4
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 2.4e-143 512.7 382 69.4
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 2.4e-143 512.7 381 69.0
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 3.2e-143 512.3 381 69.6
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 7.0e-143 511.1 397 67.8
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.2e-142 510.4 382 69.1
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 1.2e-142 510.4 377 70.6
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 2.0e-142 509.6 397 67.5
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 4.6e-142 508.4 387 67.4
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 1.0e-141 507.3 382 68.6
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 1.3e-141 506.9 382 68.3
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 1.7e-141 506.5 382 67.8
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.7e-141 506.5 379 69.4
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 3.9e-141 505.4 384 66.4
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 6.6e-141 504.6 386 67.1
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 8.6e-141 504.2 382 68.8
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 8.6e-141 504.2 381 68.8
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 8.6e-141 504.2 397 67.5
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 1.1e-140 503.8 382 68.8
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 2.5e-140 502.7 382 68.3
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 3.3e-140 502.3 383 69.5
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 4.3e-140 501.9 388 66.5
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 4.3e-140 501.9 377 69.8
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 1.6e-139 500.0 384 67.7
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 1.8e-138 496.5 390 65.4
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 2.3e-138 496.1 367 69.5
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 3.1e-138 495.7 391 66.5
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 3.1e-138 495.7 397 64.5
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 8.9e-138 494.2 397 64.2
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.0e-137 493.0 382 67.8
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 2.0e-137 493.0 377 65.8
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 9.8e-137 490.7 382 67.3
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 9.8e-137 490.7 390 64.4
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 3.7e-136 488.8 382 67.8
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 4.9e-136 488.4 382 67.8
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 8.3e-136 487.6 386 65.8
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 2.7e-134 482.6 383 65.8
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 4.6e-134 481.9 377 66.0
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 6.0e-134 481.5 408 62.5
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 7.8e-134 481.1 378 66.1
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 1.3e-133 480.3 384 64.8
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 3.0e-133 479.2 385 63.9
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 3.9e-133 478.8 387 64.3
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 5.1e-133 478.4 393 63.9
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 8.6e-133 477.6 383 65.0
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.5e-132 476.9 393 63.9
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 6.2e-131 471.5 382 63.9
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 3.1e-130 469.2 383 63.7
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.0e-130 468.8 387 64.1
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 5.2e-130 468.4 383 63.2
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 5.2e-130 468.4 383 64.2
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 8.9e-130 467.6 382 63.9
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 2.0e-129 466.5 382 64.1
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 7.6e-129 464.5 381 62.2
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 3.7e-128 462.2 368 64.4
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 3.7e-128 462.2 383 64.0
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 4.9e-128 461.8 382 61.8
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 1.6e-126 456.8 384 62.5
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 2.1e-126 456.4 382 61.5
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 3.5e-126 455.7 386 61.7
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 4.6e-126 455.3 386 61.1
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 1.0e-125 454.1 385 61.0
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 1.7e-125 453.4 385 62.6
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 1.7e-125 453.4 384 63.0
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 3.0e-125 452.6 384 61.7
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 5.1e-125 451.8 384 62.2
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 1.9e-124 449.9 330 71.5
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 4.3e-124 448.7 323 70.3
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.1e-122 444.1 378 61.4
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 1.8e-122 443.4 383 61.6
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 2.4e-122 443.0 384 60.4
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 3.1e-122 442.6 384 61.2
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 3.1e-122 442.6 380 60.5
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 1.9e-119 433.3 380 62.1
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 7.8e-118 427.9 397 57.7
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 3.0e-117 426.0 384 58.6
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 3.9e-117 425.6 383 60.6
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 7.3e-116 421.4 359 61.3
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 5.3e-114 415.2 382 56.5
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 2.9e-112 409.5 311 69.8
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 1.2e-110 404.1 370 60.3
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 1.7e-109 400.2 397 52.6
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 3.0e-109 399.4 365 58.6
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.8e-107 392.9 323 63.2
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 6.9e-106 388.3 331 63.1
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 2.2e-104 383.3 375 54.4
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 9.0e-98 361.3 277 65.3
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 2.0e-97 360.1 376 51.3
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 2.6e-97 359.8 385 53.5
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.0e-93 347.8 315 57.1
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 3.4e-89 332.8 303 58.1
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.0e-81 307.0 200 80.5
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.1e-79 301.2 152 97.4
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.6e-68 263.5 161 83.2
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 7.4e-68 261.9 294 47.6
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 1.8e-66 257.3 261 55.9
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.7e-64 250.8 172 74.4
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 5.0e-64 249.2 377 40.1
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 4.5e-57 226.1 327 45.0
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.5e-55 220.3 150 76.0
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 8.0e-54 215.3 328 36.9
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 8.0e-54 215.3 207 52.7
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.6e-52 210.3 168 66.7
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 9.1e-50 201.8 168 64.9
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 3.8e-48 196.4 192 51.6
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 9.5e-39 165.2 133 68.4
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 1.6e-38 164.5 236 40.3
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 2.1e-38 164.1 133 67.7
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 3.6e-38 163.3 120 72.5
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 3.9e-32 143.3 121 64.5
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 4.7e-30 136.3 80 85.0
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.0e-29 135.2 91 67.0
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 3.9e-24 116.7 102 64.7
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 7.5e-20 102.4 94 60.6
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 7.5e-20 102.4 201 35.8
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 7.3e-15 85.9 45 93.3
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 7.3e-15 85.9 45 93.3
A07p02870 Brassica napus HOM05D012141 ORTHO05D013118 2.6e-12 77.4 69 65.2


User provided reference genes

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