Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G6760 Aethionema arabicum HOM05D005208 ORTHO05D006415 1.4e-63 246.1 122 100.0
Thhalv10005187m.g Eutrema salsugineum HOM05D005208 ORTHO05D006415 6.0e-43 177.6 122 78.7
AL5G13680 Arabidopsis lyrata HOM05D005208 ORTHO05D006415 7.8e-43 177.2 122 78.7
Sp2g14670 Schrenkiella parvula HOM05D005208 ORTHO05D006415 7.8e-43 177.2 122 78.7
CARHR146260 Cardamine hirsuta HOM05D005208 ORTHO05D006415 1.3e-42 176.4 122 77.9
Carub.0005s0302 Capsella rubella HOM05D005208 ORTHO05D006415 1.7e-42 176.0 122 77.9
AT2G03870 Arabidopsis thaliana HOM05D005208 ORTHO05D006415 3.9e-42 174.9 122 77.9
A02p33690 Brassica napus HOM05D005208 ORTHO05D006415 6.6e-42 174.1 122 77.9
BraA02t08388Z Brassica rapa HOM05D005208 ORTHO05D006415 6.6e-42 174.1 122 77.9
FAN03G3338 Fragaria x ananassa HOM05D005208 ORTHO05D006415 1.9e-41 172.6 122 74.6
FAN06G3906 Fragaria x ananassa HOM05D005208 ORTHO05D006415 1.9e-41 172.6 122 74.6
FAN10G1294 Fragaria x ananassa HOM05D005208 ORTHO05D006415 1.9e-41 172.6 122 74.6
Rhsim07G0054400 Rhododendron simsii HOM05D005208 ORTHO05D006415 2.5e-41 172.2 122 75.4
BcaC03g17248 Brassica carinata HOM05D005208 ORTHO05D006415 3.3e-41 171.8 122 77.0
C02p51820 Brassica napus HOM05D005208 ORTHO05D013951 3.3e-41 171.8 122 77.0
BolC2t11268H Brassica oleracea HOM05D005208 ORTHO05D006415 3.3e-41 171.8 122 77.0
MD07G1007200 Malus domestica HOM05D005208 ORTHO05D006415 3.3e-41 171.8 122 74.6
RcHm_v2.0_Chr1g0314961 Rosa chinensis HOM05D005208 ORTHO05D006415 3.3e-41 171.8 122 74.6
TWI14G0133 Tripterygium wilfordii HOM05D005208 ORTHO05D006415 3.3e-41 171.8 122 75.4
arahy.Tifrunner.gnm1.ann1.SLE1RG Arachis hypogaea HOM05D005208 ORTHO05D006415 4.3e-41 171.4 122 75.4
BcaC06g31141 Brassica carinata HOM05D005208 ORTHO05D006415 4.3e-41 171.4 122 76.2
Lalb_Chr12g0205961 Lupinus albus HOM05D005208 ORTHO05D006415 4.3e-41 171.4 122 75.4
Actinidia36719 Actinidia chinensis HOM05D005208 ORTHO05D006415 7.3e-41 170.6 122 74.6
CiPaw.13G163800 Carya illinoinensis HOM05D005208 ORTHO05D006415 9.5e-41 170.2 122 75.4
Haze_23082 Corylus avellana HOM05D005208 ORTHO05D006415 9.5e-41 170.2 122 74.6
DCAR_006299 Daucus carota HOM05D005208 ORTHO05D006415 1.2e-40 169.9 122 74.6
Gohir.A08G027400 Gossypium hirsutum HOM05D005208 ORTHO05D006415 1.2e-40 169.9 122 74.6
Gohir.D08G038100 Gossypium hirsutum HOM05D005208 ORTHO05D006415 1.2e-40 169.9 122 74.6
Gorai.004G036100 Gossypium raimondii HOM05D005208 ORTHO05D006415 1.2e-40 169.9 122 74.6
Potri.001G269500 Populus trichocarpa HOM05D005208 ORTHO05D006415 1.2e-40 169.9 122 74.6
Potri.009G064000 Populus trichocarpa HOM05D005208 ORTHO05D006415 1.2e-40 169.9 122 74.6
Sabra09G0047300 Salix brachista HOM05D005208 ORTHO05D006415 1.2e-40 169.9 122 74.6
TAR369G0402 Trochodendron aralioides HOM05D005208 ORTHO05D006415 1.2e-40 169.9 122 73.8
C07p34250 Brassica napus HOM05D005208 ORTHO05D006415 1.6e-40 169.5 121 76.0
Dinv43460 Davidia involucrata HOM05D005208 ORTHO05D006415 1.6e-40 169.5 122 73.8
Eucgr.K01365 Eucalyptus grandis HOM05D005208 ORTHO05D006415 1.6e-40 169.5 122 74.6
FAN01G2640 Fragaria x ananassa HOM05D005208 ORTHO05D006415 1.6e-40 169.5 122 73.8
CSS0039411 Camellia sinensis var. sinensis HOM05D005208 ORTHO05D006415 2.1e-40 169.1 122 74.6
Nn7g36187 Nelumbo nucifera HOM05D005208 ORTHO05D006415 2.1e-40 169.1 122 73.8
Thecc.01G413400 Theobroma cacao HOM05D005208 ORTHO05D006415 2.1e-40 169.1 122 74.6
MSTRG.5012 Avicennia marina HOM05D005208 ORTHO05D006415 3.6e-40 168.3 122 73.8
BcaB07g30643 Brassica carinata HOM05D005208 ORTHO05D006415 3.6e-40 168.3 122 75.4
A06p42830 Brassica napus HOM05D005208 ORTHO05D006415 3.6e-40 168.3 121 75.2
Ciclev10033061m.g Citrus clementina HOM05D005208 ORTHO05D006415 3.6e-40 168.3 122 73.8
ECA234G4110 Erigeron canadensis HOM05D005208 ORTHO05D006415 3.6e-40 168.3 122 73.8
Manes.10G145800 Manihot esculenta HOM05D005208 ORTHO05D006415 3.6e-40 168.3 122 73.8
Manes.10G146000 Manihot esculenta HOM05D005208 ORTHO05D006415 3.6e-40 168.3 122 73.8
vmacro07761 Vaccinium macrocarpon HOM05D005208 ORTHO05D006415 4.7e-40 167.9 122 73.8
BolC7t43954H Brassica oleracea HOM05D005208 ORTHO05D006415 6.2e-40 167.5 120 75.8
Duzib268G0815 Durio zibethinus HOM05D005208 ORTHO05D006415 6.2e-40 167.5 122 73.0
Phvul.L003846 Phaseolus vulgaris HOM05D005208 ORTHO05D006415 6.2e-40 167.5 122 73.8
PGR119G1849 Punica granatum HOM05D005208 ORTHO05D006415 6.2e-40 167.5 115 77.4
VMungo1127G1122 Vigna mungo HOM05D005208 ORTHO05D006415 6.2e-40 167.5 122 73.8
CANSAT11G1283 Cannabis sativa HOM05D005208 ORTHO05D006415 8.1e-40 167.2 122 73.8
COL.COLO4_23915 Corchorus olitorius HOM05D005208 ORTHO05D006415 8.1e-40 167.2 121 74.4
ECA234G2562 Erigeron canadensis HOM05D005208 ORTHO05D006415 8.1e-40 167.2 122 73.8
THA.LOC104809874 Tarenaya hassleriana HOM05D005208 ORTHO05D006415 8.1e-40 167.2 120 75.0
Cc02_g27590 Coffea canephora HOM05D005208 ORTHO05D006415 1.1e-39 166.8 122 72.1
Duzib138G0119 Durio zibethinus HOM05D005208 ORTHO05D006415 1.1e-39 166.8 122 73.0
Glyma.08G105900 Glycine max HOM05D005208 ORTHO05D006415 1.1e-39 166.8 119 74.8
HanXRQChr16g0519561 Helianthus annuus HOM05D005208 ORTHO05D006415 1.1e-39 166.8 122 73.0
Medtr7g065100 Medicago truncatula HOM05D005208 ORTHO05D006415 1.1e-39 166.8 122 73.8
PSO447G0208 Papaver somniferum HOM05D005208 ORTHO05D006415 1.1e-39 166.8 117 76.1
Sc09g0000550 Simmondsia chinensis HOM05D005208 ORTHO05D006415 1.1e-39 166.8 122 72.1
Ah.12g055270 Amaranthus hybridus HOM05D005208 ORTHO05D006415 1.4e-39 166.4 122 73.0
BraA06t27195Z Brassica rapa HOM05D005208 ORTHO05D006415 1.4e-39 166.4 120 75.0
AUR62007315 Chenopodium quinoa HOM05D005208 ORTHO05D006415 1.4e-39 166.4 122 73.0
AUR62018690 Chenopodium quinoa HOM05D005208 ORTHO05D006415 1.4e-39 166.4 122 73.0
Glyma.05G149300 Glycine max HOM05D005208 ORTHO05D006415 1.4e-39 166.4 119 74.8
MBI11_g24620_MAGBIO Magnolia biondii HOM05D005208 ORTHO05D006415 1.4e-39 166.4 121 73.6
Sed0001189 Sechium edule HOM05D005208 ORTHO05D006415 1.4e-39 166.4 122 72.1
Sc20g0007120 Simmondsia chinensis HOM05D005208 ORTHO05D006415 1.8e-39 166.0 119 74.8
QL04p005416 Quercus lobata HOM05D005208 ORTHO05D006415 2.3e-39 165.6 120 75.8
SGA_v2.0_scaffold4G02254 Striga asiatica HOM05D005208 ORTHO05D006415 2.3e-39 165.6 121 74.4
TAR633G0908 Trochodendron aralioides HOM05D005208 ORTHO05D006415 2.3e-39 165.6 121 72.7
Psat4g195040 Pisum sativum HOM05D005208 ORTHO05D006415 3.1e-39 165.2 115 76.5
Hund19747 Selenicereus undatus HOM05D005208 ORTHO05D006415 3.1e-39 165.2 122 72.1
Oeu064261.1 Olea europaea HOM05D005208 ORTHO05D006415 4.0e-39 164.9 122 72.1
HPP92_022787 Vanilla planifolia HOM05D005208 ORTHO05D006415 4.0e-39 164.9 122 71.3
GSVIVG01032062001 Vitis vinifera HOM05D005208 ORTHO05D006415 4.0e-39 164.9 121 73.6
CsaV3_3G032260 Cucumis sativus L. HOM05D005208 ORTHO05D006415 5.2e-39 164.5 122 73.0
SalBow4G0699 Salvia bowleyana HOM05D005208 ORTHO05D006415 5.2e-39 164.5 122 72.1
CiPaw.13G003300 Carya illinoinensis HOM05D005208 ORTHO05D006415 6.8e-39 164.1 123 73.2
CDE04G0027 Ceratophyllum demersum HOM05D005208 ORTHO05D006415 6.8e-39 164.1 122 71.3
CDE07G1423 Ceratophyllum demersum HOM05D005208 ORTHO05D006415 6.8e-39 164.1 122 71.3
Ca_27575_v3 Cicer arietinum L. HOM05D005208 ORTHO05D006415 6.8e-39 164.1 122 72.1
ClCG10G012490 Citrullus lanatus HOM05D005208 ORTHO05D006415 6.8e-39 164.1 122 72.1
Oeu039120.1 Olea europaea HOM05D005208 ORTHO05D006415 6.8e-39 164.1 121 72.7
QL02p017788 Quercus lobata HOM05D005208 ORTHO05D006415 8.9e-39 163.7 120 75.0
ATR0605G393 Amborella trichopoda HOM05D005208 ORTHO05D006415 2.6e-38 162.2 121 71.1
EL10Ac7g17127 Beta vulgaris HOM05D005208 ORTHO05D006415 3.4e-38 161.8 125 71.2
Lj3g0003154 Lotus japonicus HOM05D005208 ORTHO05D006415 3.4e-38 161.8 122 72.1
Hund22069 Selenicereus undatus HOM05D005208 ORTHO05D006415 3.4e-38 161.8 117 72.6
Haze_03233 Corylus avellana HOM05D005208 ORTHO05D006415 4.4e-38 161.4 126 73.8
Peaxi162Scf00200g01315 Petunia axillaris HOM05D005208 ORTHO05D006415 4.4e-38 161.4 122 69.7
SEGI_02845 Sequoiadendron giganteum HOM05D005208 ORTHO05D006415 4.4e-38 161.4 119 72.3
Lalb_Chr25g0283181 Lupinus albus HOM05D005208 ORTHO05D006415 7.6e-38 160.6 122 71.3
Migut.H01631 Erythranthe guttata HOM05D005208 ORTHO05D006415 1.3e-37 159.8 122 69.7
arahy.Tifrunner.gnm1.ann1.V9LFMD Arachis hypogaea HOM05D005208 ORTHO05D006415 1.7e-37 159.5 142 64.8
Solyc09g009640.3 Solanum lycopersicum HOM05D005208 ORTHO05D006415 3.7e-37 158.3 122 69.7
Sopen09g004410 Solanum pennellii HOM05D005208 ORTHO05D006415 3.7e-37 158.3 122 69.7
PGSC0003DMG400002694 Solanum tuberosum HOM05D005208 ORTHO05D006415 3.7e-37 158.3 122 69.7
Mapoly0087s0020 Marchantia polymorpha HOM05D005208 ORTHO05D006415 1.4e-36 156.4 122 69.7
SMO141G0024 Selaginella moellendorffii HOM05D005208 ORTHO05D006415 1.4e-36 156.4 119 68.9
CAN.G397.27 Capsicum annuum HOM05D005208 ORTHO05D006415 1.9e-36 156.0 121 69.4
Os08g0177700 Oryza sativa ssp. japonica HOM05D005208 ORTHO05D006415 1.9e-36 156.0 115 72.2
Nitab4.5_0002068g0050 Nicotiana tabacum HOM05D005208 ORTHO05D006415 3.2e-36 155.2 122 68.0
Pp3c8_4480 Physcomitrium patens HOM05D005208 ORTHO05D006415 3.2e-36 155.2 115 71.3
AagrBONN_evm.TU.Sc2ySwM_117.3183 Anthoceros agrestis HOM05D005208 ORTHO05D006415 1.6e-35 152.9 122 67.2
Pp3c4_9640 Physcomitrium patens HOM05D005208 ORTHO05D006415 2.1e-35 152.5 119 68.1
Glyma.12G239000 Glycine max HOM05D005208 ORTHO05D006415 2.7e-35 152.1 122 70.5
Lj4g0005394 Lotus japonicus HOM05D005208 ORTHO05D006415 2.7e-35 152.1 115 73.0
Zm00001eb069280 Zea mays HOM05D005208 ORTHO05D006415 2.7e-35 152.1 115 69.6
AagrBONN_evm.TU.Sc2ySwM_368.1897 Anthoceros agrestis HOM05D005208 ORTHO05D006415 7.8e-35 150.6 115 69.6
Zm00001eb431700 Zea mays HOM05D005208 ORTHO05D006415 1.3e-34 149.8 115 69.6
Dinv09372 Davidia involucrata HOM05D005208 ORTHO05D006415 3.0e-34 148.7 113 71.7
Medtr8g036205 Medicago truncatula HOM05D005208 ORTHO05D006415 1.2e-32 143.3 108 73.1
Nitab4.5_0023856g0010 Nicotiana tabacum HOM05D005208 ORTHO05D006415 5.2e-31 137.9 112 65.2
MCO14G462 Micromonas commoda HOM05D005208 ORTHO05D006415 1.2e-30 136.7 119 61.3
vmacro00152 Vaccinium macrocarpon HOM05D005208 ORTHO05D006415 4.4e-30 134.8 155 54.8
Cre03.g164101 Chlamydomonas reinhardtii HOM05D005208 ORTHO05D006415 1.7e-29 132.9 118 59.3
FvH4_7g00800 Fragaria vesca HOM05D005208 ORTHO05D006415 4.2e-28 128.3 94 73.4
BolC7t45182H Brassica oleracea HOM05D005208 ORTHO05D006415 5.4e-28 127.9 102 69.6
MD02G1314900 Malus domestica HOM05D005208 ORTHO05D006415 7.1e-28 127.5 94 73.4
Atru.chr11.2641 Acer truncatum HOM05D005208 ORTHO05D006415 1.2e-27 126.7 102 68.6
Nn2g15393 Nelumbo nucifera HOM05D005208 ORTHO05D006415 2.1e-27 125.9 94 72.3
Sabra16G0165100 Salix brachista HOM05D005208 ORTHO05D006415 7.8e-27 124.0 213 42.7
Prupe.2G010100 Prunus persica HOM05D005208 ORTHO05D006415 1.7e-26 122.9 93 72.0
Aqoxy5G03601_Aqoxy5G03602 Aquilegia oxysepala HOM05D005208 ORTHO05D006415 2.5e-25 119.0 92 71.7
PSO210G4938 Papaver somniferum HOM05D005208 ORTHO05D006415 4.3e-25 118.2 91 71.4
PRCOL_00006352 Prasinoderma coloniale HOM05D000731 ORTHO05D005852 9.6e-25 117.1 115 56.5
Aqoxy6G00475 Aquilegia oxysepala HOM05D005208 ORTHO05D006415 2.1e-24 115.9 104 65.4
Migut.N01478 Erythranthe guttata HOM05D005208 ORTHO05D006415 2.4e-23 112.5 122 54.1
TPR.G21719 Trifolium pratense HOM05D005208 ORTHO05D006415 6.9e-23 110.9 87 69.0
Sed0010704 Sechium edule HOM05D005208 ORTHO05D006415 2.9e-21 105.5 60 85.0
MELO3C000014.2 Cucumis melo HOM05D005208 ORTHO05D006415 1.1e-20 103.6 55 92.7
Haze_27705 Corylus avellana HOM05D005208 ORTHO05D006415 2.4e-20 102.4 112 45.5
Cpa.g.sc3559.1 Carica papaya HOM05D005208 ORTHO05D006415 4.2e-20 101.7 51 98.0
TPR.G34585 Trifolium pratense HOM05D000107 ORTHO05D000062 9.6e-17 90.5 77 64.9
Pp3c3_27830 Physcomitrium patens HOM05D005208 ORTHO05D006415 1.4e-15 86.7 121 46.3
Ah.08g209200 Amaranthus hybridus HOM05D005208 ORTHO05D006415 2.6e-14 82.4 48 83.3
QL02p017866 Quercus lobata HOM05D005208 ORTHO05D006415 3.4e-14 82.0 52 78.8
MELO3C023964.2 Cucumis melo HOM05D005208 ORTHO05D006415 3.8e-13 78.6 64 64.1
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 6.4e-13 77.8 45 82.2
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 2.7e-11 72.4 35 100.0
Actinidia31052 Actinidia chinensis HOM05D005208 ORTHO05D006415 3.5e-11 72.0 50 72.0
MELO3C030676.2 Cucumis melo HOM05D005208 ORTHO05D006415 8.1e-08 60.8 32 93.8
Sabra01G0090000 Salix brachista HOM05D005208 ORTHO05D009147 4.0e-07 58.5 28 100.0
Gohir.A04G061800 Gossypium hirsutum HOM05D003494 ORTHO05D004033 2.6e-06 55.8 43 53.5
CAN.G1433.22 Capsicum annuum HOM05D003494 ORTHO05D004033 4.5e-06 55.1 40 57.5
Solyc05g055260.4 Solanum lycopersicum HOM05D003494 ORTHO05D004033 4.5e-06 55.1 40 57.5
Sopen05g033700 Solanum pennellii HOM05D003494 ORTHO05D004033 4.5e-06 55.1 40 57.5
PGSC0003DMG400023392 Solanum tuberosum HOM05D003494 ORTHO05D004033 4.5e-06 55.1 40 57.5
AL4G13960 Arabidopsis lyrata HOM05D003494 ORTHO05D004033 5.8e-06 54.7 40 57.5
AT2G23930 Arabidopsis thaliana HOM05D003494 ORTHO05D004033 5.8e-06 54.7 40 57.5
EL10Ac6g14102 Beta vulgaris HOM05D005208 ORTHO05D006415 5.8e-06 54.7 28 92.9
Carub.0004s0309 Capsella rubella HOM05D003494 ORTHO05D004033 5.8e-06 54.7 40 57.5
Thhalv10021862m.g Eutrema salsugineum HOM05D003494 ORTHO05D004033 5.8e-06 54.7 46 50.0
Glyma.11G086200 Glycine max HOM05D003494 ORTHO05D004033 5.8e-06 54.7 40 55.0
CAN.G645.27 Capsicum annuum HOM05D003494 ORTHO05D004033 7.6e-06 54.3 40 57.5
Peaxi162Scf00173g00010 Petunia axillaris HOM05D003494 ORTHO05D004033 7.6e-06 54.3 40 57.5
Peaxi162Scf00519g00617 Petunia axillaris HOM05D003494 ORTHO05D004033 7.6e-06 54.3 40 57.5
Sp3g09730 Schrenkiella parvula HOM05D003494 ORTHO05D004033 7.6e-06 54.3 44 52.3
Solyc11g006820.2 Solanum lycopersicum HOM05D003494 ORTHO05D004033 7.6e-06 54.3 40 57.5
Sopen11g002740 Solanum pennellii HOM05D003494 ORTHO05D004033 7.6e-06 54.3 40 57.5
PGSC0003DMG400023981 Solanum tuberosum HOM05D003494 ORTHO05D004033 7.6e-06 54.3 40 57.5
Lj1g0025547 Lotus japonicus HOM05D003494 ORTHO05D004033 1.0e-05 53.9 40 52.5


User provided reference genes

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