Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 3718.7 1890 100.0
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 3530.0 1890 94.4
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 2953.3 1893 79.3
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 2407.5 1837 66.7
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2216.8 1900 61.5
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 1966.4 1921 54.1
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1961.4 1915 53.7
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1960.3 1923 53.7
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1945.2 1915 54.0
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 1942.9 1920 53.8
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1914.0 1970 52.7
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1891.7 1896 52.7
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1880.5 1918 52.5
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1880.1 1926 52.5
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1878.2 1921 52.4
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1868.6 1928 52.0
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1865.1 1926 51.4
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1840.1 1941 50.5
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1838.2 1925 51.6
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1833.5 1919 50.7
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1828.9 1919 50.9
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1821.6 1928 50.9
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1819.3 1923 51.2
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1804.3 1928 51.0
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1801.2 1930 50.5
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1796.9 1930 50.0
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1790.4 1953 50.3
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1787.3 1930 50.1
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1784.2 1967 49.7
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1780.8 1920 50.6
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1775.4 1912 49.6
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1769.6 1939 50.0
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1757.3 1920 49.6
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1751.1 1939 49.5
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1747.6 1938 48.8
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1745.7 1924 48.8
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1745.7 1924 49.0
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1733.8 1915 48.9
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1732.2 1904 49.7
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1731.5 1917 48.9
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1731.5 1917 48.5
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1729.1 1920 49.1
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1728.4 1926 48.8
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1728.0 1913 48.9
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1725.7 1912 48.7
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1722.6 1924 48.6
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1721.1 1932 48.7
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1718.0 1920 48.8
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1715.3 1973 47.4
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1711.4 1915 48.3
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1706.0 1900 48.5
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1702.6 1931 48.7
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1695.2 1916 48.3
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1695.2 1917 48.4
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1692.6 1911 47.9
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1691.4 1906 47.9
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1680.6 1920 48.4
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1678.7 1932 47.5
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1675.2 1903 48.9
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1674.1 2103 45.9
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1671.4 1938 47.3
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1669.8 1945 48.7
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1668.3 2041 45.6
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1655.2 1861 48.4
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1648.3 1901 47.4
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1640.9 1900 47.5
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1640.6 1905 47.2
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1640.2 1924 48.2
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1638.2 1919 47.3
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1626.3 1902 46.7
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1623.2 1903 47.0
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1621.7 1956 45.9
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1616.3 1905 46.5
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1612.4 1906 46.7
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1611.7 1925 46.8
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1611.3 2422 40.7
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1603.2 1921 45.8
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1599.3 1902 46.8
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1599.3 1916 46.9
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1590.9 1778 48.6
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1583.9 1897 46.5
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1582.4 1860 48.6
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1569.7 1895 46.0
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1569.7 1917 45.6
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1567.4 1896 46.1
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1561.2 1896 45.6
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1557.7 1820 47.4
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1553.1 1909 45.8
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1543.5 1972 44.7
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1532.7 1811 46.5
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1523.1 1898 45.6
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1515.4 1917 44.5
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1480.3 1946 43.1
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1367.1 1961 40.4
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1361.3 1700 45.1
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1351.3 1953 40.9
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1299.6 1328 52.5
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1250.0 1947 38.9
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1210.3 1202 53.2
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1189.9 1584 42.8
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 2.0e-291 1006.9 2059 32.2
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 7.3e-289 998.4 2036 32.9
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 1.8e-279 967.2 891 57.1
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 2.9e-277 959.9 1101 47.2
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 7.8e-275 951.8 1986 33.6
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 1.6e-264 917.5 1126 44.8
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 1.5e-257 894.4 1909 32.6
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 1.4e-247 861.3 1684 33.3
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 4.4e-225 786.6 1071 41.7
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 3.8e-205 720.3 772 49.6
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 1.7e-176 625.2 916 38.8
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 2.9e-128 464.9 699 39.5
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 2.0e-76 292.7 259 54.8
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 2.9e-67 262.3 183 72.7
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 6.4e-59 234.6 171 67.3
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 8.3e-59 234.2 564 29.3
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 3.1e-53 215.7 219 45.7
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 7.5e-52 211.1 638 27.7
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 1.1e-47 197.2 388 34.0
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 1.1e-47 197.2 218 44.0
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 1.5e-47 196.8 233 46.8
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 1.3e-43 183.7 137 66.4
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 3.6e-38 165.6 103 84.5
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 2.7e-33 149.4 128 56.2
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 3.6e-30 139.0 169 42.0
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 3.1e-29 136.0 209 32.5
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 9.0e-21 107.8 121 48.8
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 2.6e-20 106.3 94 54.3
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 5.8e-20 105.1 76 63.2
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 7.1e-18 98.2 82 63.4
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 3.7e-14 85.9 125 35.2
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 4.0e-13 82.4 186 31.2
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 6.9e-13 81.6 107 39.3
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 1.7e-11 77.0 62 53.2
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 1.9e-10 73.6 169 28.4
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 4.8e-06 58.9 96 38.5


User provided reference genes

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