Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1724.5 863 100.0
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1708.3 863 98.7
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1559.7 858 89.5
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1483.8 866 85.3
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1270.0 871 70.8
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1264.6 865 71.8
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1263.8 859 70.9
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1260.4 862 70.4
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1255.7 862 70.2
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1255.7 862 70.2
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1255.0 862 70.3
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1253.4 863 70.0
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1252.3 859 71.0
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1247.3 863 69.8
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1246.1 864 70.5
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1243.8 860 70.2
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1238.4 862 70.5
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1235.7 882 68.5
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1229.5 865 69.8
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1228.4 865 68.9
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1227.6 869 69.4
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1226.8 866 69.4
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1223.4 897 67.1
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1221.1 862 69.3
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1220.3 861 69.3
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1220.3 864 69.2
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1219.5 864 68.9
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1219.1 864 68.8
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1218.8 862 69.3
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1218.0 859 69.4
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1217.6 860 69.3
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1216.8 863 68.6
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1216.4 865 68.8
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1216.1 861 69.1
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1213.7 864 68.2
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1211.8 865 69.5
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1211.4 867 69.7
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1211.4 860 68.8
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1209.9 864 68.2
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1209.1 861 69.5
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1207.6 865 69.4
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1206.0 861 68.8
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1204.5 861 67.9
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1204.1 885 67.3
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1204.1 861 69.1
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1199.5 861 68.6
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1198.0 859 67.8
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1198.0 864 68.3
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1191.4 853 68.2
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1190.3 880 67.0
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1187.2 867 67.9
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1185.2 860 67.2
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1184.1 865 68.8
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1182.9 865 67.5
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1181.0 786 74.6
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1175.6 926 63.4
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1171.8 861 66.3
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1170.6 861 67.5
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1170.6 865 66.1
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1169.8 855 66.8
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1167.9 863 66.3
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1167.5 865 65.9
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1161.0 867 66.9
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1159.8 919 64.0
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1156.0 866 67.2
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1152.1 863 65.2
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1144.0 1003 59.1
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1142.1 865 65.5
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1141.3 835 67.3
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1138.3 865 65.4
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1137.5 856 65.2
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1130.9 863 65.2
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1129.0 856 65.2
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1128.2 856 64.7
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1127.9 878 62.9
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1127.5 856 65.3
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1126.3 856 65.3
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1125.2 856 64.5
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1124.0 856 65.0
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1124.0 856 65.0
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1123.2 856 64.3
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1122.5 856 64.8
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1118.2 874 64.1
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1102.0 862 63.6
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1098.2 864 61.7
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1097.4 860 63.8
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1097.0 903 60.9
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1095.1 867 62.9
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1093.6 951 59.6
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1087.8 856 62.9
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1076.2 890 62.1
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 1.1e-295 1020.0 893 59.1
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 1.4e-292 1009.6 691 71.1
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 5.7e-289 997.7 937 57.3
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 1.5e-286 989.6 750 67.2
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 1.7e-285 986.1 789 64.6
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 6.1e-275 951.0 648 71.5
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 3.3e-265 918.7 880 51.7
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 3.2e-260 902.1 872 51.3
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 3.3e-252 875.5 876 50.1
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.1e-244 850.5 626 66.9
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 8.3e-224 781.2 869 45.5
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 2.1e-206 723.4 559 64.9
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 3.9e-205 719.2 878 45.9
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 3.6e-203 712.6 584 63.4
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 6.7e-197 691.8 494 70.6
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 7.1e-191 671.8 961 40.0
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 9.7e-180 634.8 486 66.0
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 5.3e-170 602.4 501 61.3
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 1.9e-167 594.0 440 68.6
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 1.2e-166 591.3 843 42.3
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 4.1e-162 576.2 481 58.2
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 7.0e-162 575.5 382 69.1
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 2.1e-134 484.2 613 46.8
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 4.9e-131 473.0 328 68.0
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.2e-130 470.3 378 63.0
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 3.9e-88 330.5 387 51.7
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 2.0e-76 291.6 162 82.1
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.2e-75 288.1 216 63.9
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 1.5e-71 275.4 657 29.8
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 4.3e-63 247.3 621 28.5
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 2.3e-48 198.4 156 62.2
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.4e-37 161.8 131 57.3
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 2.5e-34 151.8 683 22.7
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 2.7e-28 131.7 368 28.3
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.8e-27 127.9 97 58.8
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 3.0e-24 118.2 128 46.9
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 1.3e-22 112.8 128 45.3
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 7.7e-20 103.6 116 44.0
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 3.3e-18 98.2 93 52.7
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 8.9e-16 90.1 130 40.8
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 3.7e-14 84.7 42 88.1
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 6.6e-11 73.9 85 44.7
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 5.8e-07 60.8 42 66.7
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 8.3e-06 57.0 28 82.1


User provided reference genes

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