Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 8.9e-85 317.8 295 100.0
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 8.9e-85 317.8 295 100.0
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.2e-67 260.0 297 85.2
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 3.8e-67 259.2 153 86.9
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 6.4e-67 258.5 153 85.0
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 8.4e-67 258.1 153 86.3
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 8.4e-67 258.1 153 85.0
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 8.4e-67 258.1 153 85.0
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 8.4e-67 258.1 153 84.3
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 8.4e-67 258.1 153 86.3
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 8.4e-67 258.1 150 87.3
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.1e-66 257.7 153 86.3
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.1e-66 257.7 153 86.3
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.4e-66 257.3 153 86.3
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.4e-66 257.3 153 85.0
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.4e-66 257.3 153 85.6
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 1.4e-66 257.3 153 86.3
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.4e-66 257.3 153 86.3
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.4e-66 257.3 153 86.3
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.9e-66 256.9 153 86.3
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.9e-66 256.9 153 86.3
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.9e-66 256.9 153 86.3
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.9e-66 256.9 153 86.3
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 2.4e-66 256.5 153 85.6
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 2.4e-66 256.5 153 85.0
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 3.2e-66 256.1 153 84.3
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.2e-66 256.1 153 86.3
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 5.4e-66 255.4 153 85.0
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 5.4e-66 255.4 153 85.0
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 5.4e-66 255.4 153 85.0
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 5.4e-66 255.4 153 85.6
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 5.4e-66 255.4 153 85.0
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 5.4e-66 255.4 153 85.6
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 7.1e-66 255.0 153 85.0
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 7.1e-66 255.0 153 85.6
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 7.1e-66 255.0 153 85.0
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 7.1e-66 255.0 153 85.0
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 7.1e-66 255.0 153 86.3
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 7.1e-66 255.0 153 85.6
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 9.3e-66 254.6 153 85.6
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 9.3e-66 254.6 153 85.6
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.2e-65 254.2 153 83.7
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 1.6e-65 253.8 153 85.6
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 1.6e-65 253.8 153 85.6
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.6e-65 253.8 153 85.6
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 2.1e-65 253.4 153 83.7
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 2.1e-65 253.4 153 81.7
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 2.7e-65 253.1 153 85.0
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 2.7e-65 253.1 153 83.7
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 3.5e-65 252.7 153 83.0
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 4.6e-65 252.3 153 83.7
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 6.0e-65 251.9 153 83.7
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 6.0e-65 251.9 153 83.7
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 6.0e-65 251.9 153 83.7
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 6.0e-65 251.9 153 83.7
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 6.0e-65 251.9 152 85.5
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 7.9e-65 251.5 154 85.1
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 1.0e-64 251.1 151 84.1
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.0e-64 251.1 151 84.1
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.0e-64 251.1 153 83.7
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.3e-64 250.8 154 83.1
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.8e-64 250.4 153 84.3
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.8e-64 250.4 153 83.0
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 2.3e-64 250.0 154 82.5
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 2.3e-64 250.0 153 83.7
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.0e-64 249.6 153 82.4
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 3.0e-64 249.6 153 82.4
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 3.0e-64 249.6 153 82.4
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 3.0e-64 249.6 153 83.7
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.0e-64 249.6 154 82.5
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 3.9e-64 249.2 153 83.0
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 5.1e-64 248.8 151 83.4
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 5.1e-64 248.8 153 82.4
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 5.1e-64 248.8 153 83.0
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 6.7e-64 248.4 153 82.4
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 8.7e-64 248.1 154 84.4
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 8.7e-64 248.1 154 82.5
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.1e-63 247.7 153 82.4
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.1e-63 247.7 153 81.0
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.1e-63 247.7 153 82.4
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 1.5e-63 247.3 153 82.4
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.5e-63 247.3 153 81.0
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 2.5e-63 246.5 153 81.0
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 2.5e-63 246.5 153 80.4
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.5e-63 246.5 155 81.3
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 2.5e-63 246.5 155 81.3
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.5e-63 246.5 155 81.3
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 3.3e-63 246.1 153 81.7
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 3.3e-63 246.1 154 83.8
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 4.3e-63 245.7 153 81.7
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 7.4e-63 245.0 147 85.0
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 7.4e-63 245.0 153 83.0
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 7.4e-63 245.0 153 81.7
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 9.6e-63 244.6 153 81.0
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.6e-62 243.8 153 82.4
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 3.7e-62 242.7 154 80.5
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 6.2e-62 241.9 153 81.0
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 6.2e-62 241.9 153 81.0
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 6.2e-62 241.9 153 81.0
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 8.1e-62 241.5 153 80.4
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 8.1e-62 241.5 153 81.0
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 8.1e-62 241.5 153 81.0
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 8.1e-62 241.5 154 80.5
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 8.1e-62 241.5 150 82.0
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.1e-61 241.1 151 82.1
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 4.0e-61 239.2 149 81.2
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 3.4e-60 236.1 153 80.4
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.4e-60 236.1 153 80.4
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.5e-60 235.7 153 79.7
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.5e-60 235.7 153 79.7
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 4.5e-60 235.7 146 82.9
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 5.8e-60 235.3 153 79.1
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 9.9e-60 234.6 153 80.4
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.3e-59 234.2 153 80.4
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.3e-59 234.2 152 78.9
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.3e-59 234.2 153 79.7
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.2e-59 233.4 153 80.4
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 3.8e-59 232.6 153 80.4
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 4.9e-59 232.3 151 80.8
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 1.9e-58 230.3 153 77.1
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 1.9e-58 230.3 153 76.5
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.2e-58 229.6 153 79.7
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 7.1e-58 228.4 151 80.1
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 9.3e-58 228.0 154 78.6
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 9.3e-58 228.0 149 78.5
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 2.7e-57 226.5 153 75.8
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.0e-56 224.6 135 85.9
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 5.1e-56 222.2 153 77.1
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 6.7e-56 221.9 147 76.9
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.1e-55 221.1 154 73.4
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.5e-55 220.7 155 75.5
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 8.2e-54 214.9 153 75.2
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.1e-53 214.5 297 66.7
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 2.0e-52 210.3 154 73.4
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 3.4e-52 209.5 141 75.9
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 2.2e-51 206.8 151 70.9
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 3.3e-47 193.0 128 78.1
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 3.3e-47 193.0 122 79.5
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 4.8e-46 189.1 153 68.0
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 4.8e-46 189.1 153 68.0
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 1.5e-44 184.1 123 78.0
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 2.0e-44 183.7 123 78.0
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.6e-44 183.3 153 70.6
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 5.9e-44 182.2 151 62.3
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 5.5e-42 175.6 113 78.8
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 6.7e-40 168.7 153 61.4
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 8.8e-40 168.3 153 59.5
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 4.3e-39 166.0 129 67.4
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 9.1e-37 158.3 153 59.5
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 2.5e-34 150.2 96 77.1
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 2.7e-33 146.7 98 75.5
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 2.7e-33 146.7 114 69.3
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 7.4e-31 138.7 295 51.2
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.9e-28 129.0 151 51.7
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.9e-28 129.0 151 51.7
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.9e-28 129.0 151 51.7
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.9e-27 126.7 151 51.7
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 3.8e-27 126.3 143 49.7
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 5.5e-18 95.9 53 84.9
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 5.3e-13 79.3 40 95.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 7.0e-13 79.0 55 74.5
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 3.5e-12 76.6 62 67.7
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 7.7e-12 75.5 41 85.4
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 3.4e-07 60.1 67 55.2


User provided reference genes

Program Settings