Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 2.1e-140 502.3 244 100.0
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 4.8e-84 315.1 243 64.2
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 2.6e-82 309.3 235 64.3
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.0e-81 307.4 245 62.4
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 8.5e-81 304.3 244 61.5
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 5.5e-80 301.6 236 62.7
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 1.6e-79 300.1 245 60.8
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 1.6e-79 300.1 245 62.9
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.7e-79 299.3 235 63.0
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 4.6e-79 298.5 232 64.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 7.9e-79 297.7 236 62.3
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 7.9e-79 297.7 237 62.4
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.0e-78 297.4 235 63.4
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 2.3e-78 296.2 245 61.6
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 8.8e-78 294.3 234 61.1
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.1e-77 293.9 244 61.1
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 3.3e-77 292.4 246 58.5
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 5.7e-77 291.6 245 59.2
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 5.7e-77 291.6 235 61.3
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 7.4e-77 291.2 245 60.8
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 9.7e-77 290.8 244 61.1
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 9.7e-77 290.8 242 58.7
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.3e-76 290.4 245 58.8
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.3e-76 290.4 238 59.7
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.3e-76 290.4 239 61.1
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.2e-76 289.7 243 59.3
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 2.2e-76 289.7 240 62.1
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 3.7e-76 288.9 236 58.1
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.3e-76 288.1 237 59.5
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 8.2e-76 287.7 241 58.5
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.8e-75 286.6 245 60.4
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.8e-75 286.6 235 60.9
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 3.1e-75 285.8 244 59.0
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 4.1e-75 285.4 245 57.6
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 5.3e-75 285.0 244 59.8
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 6.9e-75 284.6 234 59.0
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 9.1e-75 284.3 242 57.9
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 9.1e-75 284.3 245 57.6
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 1.2e-74 283.9 245 57.6
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 2.0e-74 283.1 234 59.4
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 2.6e-74 282.7 244 60.2
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 2.6e-74 282.7 245 60.0
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.0e-73 280.8 239 58.2
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.0e-73 280.8 234 58.1
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 2.9e-73 279.3 244 56.1
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 8.5e-73 277.7 238 58.0
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 8.5e-73 277.7 238 58.0
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 3.2e-72 275.8 244 58.2
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 3.2e-72 275.8 245 57.6
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 7.2e-72 274.6 241 56.0
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 9.4e-72 274.2 236 60.2
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 3.6e-71 272.3 239 55.6
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 3.6e-71 272.3 239 57.7
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 4.7e-71 271.9 239 57.3
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 7.9e-71 271.2 247 57.5
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 1.8e-70 270.0 236 58.9
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 3.0e-70 269.2 241 56.0
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 3.0e-70 269.2 245 55.5
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 3.9e-70 268.9 235 57.0
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 6.7e-70 268.1 240 58.3
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-69 267.3 248 56.5
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.5e-69 266.9 241 55.6
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 2.0e-69 266.5 240 53.8
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 3.3e-69 265.8 265 52.5
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.4e-69 265.4 241 54.4
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 4.4e-69 265.4 244 54.1
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.7e-69 265.0 241 55.2
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 5.7e-69 265.0 240 57.9
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 5.7e-69 265.0 241 56.4
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 9.7e-69 264.2 241 54.4
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.3e-68 263.8 241 54.4
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 2.2e-68 263.1 258 53.9
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.8e-68 262.7 241 55.2
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 2.8e-68 262.7 257 53.3
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 3.7e-68 262.3 240 55.0
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.3e-68 261.5 217 59.9
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.1e-67 260.8 242 57.4
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 1.4e-67 260.4 244 55.3
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 2.4e-67 259.6 235 55.7
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 2.4e-67 259.6 245 56.7
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 3.1e-67 259.2 245 56.3
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 5.3e-67 258.5 235 55.3
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.0e-66 256.5 246 51.6
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.0e-66 256.5 246 51.6
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.0e-66 256.5 247 54.7
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.0e-66 256.5 247 54.7
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 2.6e-66 256.1 242 56.2
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 2.6e-66 256.1 242 56.2
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 5.9e-66 255.0 241 54.8
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 7.7e-66 254.6 240 55.0
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 1.3e-65 253.8 234 51.7
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 1.3e-65 253.8 241 52.3
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 1.7e-65 253.4 244 54.5
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 1.7e-65 253.4 234 55.6
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 2.2e-65 253.1 241 53.9
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 5.0e-65 251.9 242 55.4
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 6.5e-65 251.5 235 55.3
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.9e-64 250.0 234 51.3
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.5e-64 249.6 235 52.8
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.5e-64 249.6 233 53.6
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 2.5e-64 249.6 240 53.8
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 7.2e-64 248.1 243 54.7
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 7.2e-64 248.1 245 49.8
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 9.4e-64 247.7 248 52.8
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.6e-63 246.9 235 53.6
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 2.1e-63 246.5 205 58.0
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.4e-62 243.8 244 51.6
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 1.4e-62 243.8 226 54.9
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.9e-62 242.3 241 54.4
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 1.5e-61 240.4 237 53.2
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.0e-61 240.0 234 51.3
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.0e-61 240.0 241 53.5
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.6e-61 239.6 237 52.7
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 2.6e-61 239.6 237 53.2
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 2.6e-61 239.6 237 53.2
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.4e-61 238.8 246 49.6
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 5.7e-61 238.4 237 51.9
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 7.4e-61 238.0 237 52.3
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.3e-60 237.3 237 52.7
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.7e-60 236.9 201 59.7
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 2.2e-60 236.5 237 51.9
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.8e-60 236.1 237 49.8
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.8e-60 236.1 237 52.3
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 2.8e-60 236.1 236 54.2
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 4.8e-60 235.3 238 50.0
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 6.3e-60 235.0 247 51.0
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 8.2e-60 234.6 237 51.9
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 4.1e-59 232.3 244 50.8
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 5.3e-59 231.9 232 50.0
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 5.3e-59 231.9 237 51.1
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 5.3e-59 231.9 238 50.8
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 7.0e-59 231.5 249 50.2
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 9.1e-59 231.1 217 52.5
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.0e-58 229.9 201 58.7
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 7.7e-58 228.0 220 53.2
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 7.7e-58 228.0 231 50.6
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 1.7e-57 226.9 226 53.5
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 3.8e-57 225.7 237 49.8
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 3.8e-57 225.7 237 49.8
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 1.1e-56 224.2 234 52.1
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.9e-56 223.4 245 49.0
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 1.6e-55 220.3 235 51.1
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.1e-55 219.9 238 50.4
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 3.6e-55 219.2 235 49.4
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 4.7e-55 218.8 235 48.5
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 4.7e-55 218.8 239 47.7
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.6e-53 213.0 192 55.2
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 3.3e-53 212.6 248 47.6
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 2.2e-52 209.9 231 47.2
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 1.4e-51 207.2 209 51.7
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 4.1e-51 205.7 270 41.9
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.9e-49 199.5 167 57.5
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 2.1e-47 193.4 260 40.0
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 2.7e-47 193.0 185 56.8
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.5e-45 184.9 155 58.7
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.3e-44 184.1 171 55.6
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.2e-44 183.3 247 44.1
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 1.1e-43 181.0 237 42.6
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 2.0e-42 176.8 152 59.2
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.7e-41 173.7 163 52.1
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 8.9e-38 161.4 200 46.5
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 1.1e-35 154.5 208 45.2
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 9.2e-35 151.4 127 58.3
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.0e-33 147.9 193 47.2
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 3.4e-29 132.9 99 64.6
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 3.5e-26 122.9 116 53.4
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.1e-24 117.9 121 52.1
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 4.3e-24 115.9 136 49.3
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 8.0e-23 111.7 167 38.3
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 1.1e-22 111.3 138 43.5
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.3e-22 110.2 92 57.6
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.0e-21 107.1 105 51.4
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 9.8e-21 104.8 124 45.2
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 4.9e-20 102.4 75 62.7
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 9.2e-19 98.2 76 56.6
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.2e-18 97.8 175 32.0
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.8e-15 86.7 83 51.8
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 3.1e-14 83.2 89 46.1
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 2.6e-13 80.1 133 37.6
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.2e-10 71.2 80 43.8
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 1.0e-09 68.2 171 27.5
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 2.5e-08 63.5 62 53.2


User provided reference genes

Program Settings