Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 3889.3 1960 100.0
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1914.0 1970 52.3
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1884.0 1970 52.3
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1884.0 1970 51.9
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1882.5 1971 52.2
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1867.8 1845 53.8
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1840.9 1969 50.6
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1839.7 1966 50.6
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1819.3 1975 50.2
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 1807.3 1973 49.8
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1807.0 1968 49.9
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1802.3 1977 50.6
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 1798.1 1973 50.1
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1795.0 1976 49.7
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1794.6 1976 50.1
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1793.5 1973 50.5
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1791.9 1968 49.4
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1779.2 2013 48.8
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1778.5 1966 49.1
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1763.0 1976 48.7
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1763.0 1976 48.8
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1759.2 1950 49.3
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1750.7 1976 48.5
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1750.3 1992 47.9
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1737.2 1965 48.2
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1728.8 1987 48.1
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1723.4 1972 48.5
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1721.8 1976 48.5
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1706.4 1975 47.9
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1697.2 1977 47.4
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1687.2 1972 47.1
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1686.0 1970 47.1
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1681.0 1977 47.6
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1673.3 2007 46.4
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1671.4 2001 47.1
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1656.3 1969 47.3
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1655.6 1969 46.8
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1655.2 1970 46.8
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1651.0 1973 47.3
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1650.6 1977 47.1
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1646.3 1971 46.4
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1644.0 1978 46.8
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1635.9 1975 46.6
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1624.0 1969 46.1
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1622.4 1974 46.4
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1620.1 1971 46.3
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1620.1 1968 45.3
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1617.4 2021 45.0
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1615.1 2001 46.2
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1614.7 1969 45.8
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1613.2 1970 45.8
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1606.3 1977 45.7
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1603.6 1973 46.0
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1600.5 1972 46.1
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1583.2 1973 45.9
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1575.8 1973 45.7
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1575.5 2147 43.2
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1573.1 1970 45.0
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1563.9 1972 45.0
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1563.9 1980 45.4
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1563.5 1966 45.1
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1555.8 1969 44.9
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1551.2 1972 44.7
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1544.3 2088 43.2
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1536.2 1966 43.7
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1533.1 1973 44.9
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1526.9 1847 46.7
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1518.1 1975 44.6
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1516.9 1909 44.3
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1516.5 1967 43.5
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1515.4 1959 43.6
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1515.0 1963 43.8
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1513.8 1978 43.9
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1513.4 2452 38.5
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1511.9 1979 44.4
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1510.7 1964 43.7
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1505.0 1965 42.8
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1502.6 1976 44.4
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1500.0 1969 43.6
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1499.2 1981 43.3
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1490.7 1958 43.4
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1489.6 1957 43.5
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1486.1 1972 43.3
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1483.4 1982 42.9
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1483.0 1960 43.1
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1481.8 1974 43.2
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1480.7 2016 42.2
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1476.8 1962 43.0
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1473.0 1915 44.5
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1469.5 1961 42.8
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1462.6 1975 42.7
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1456.8 1878 44.1
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1448.7 1930 44.2
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1406.7 1956 42.0
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1391.7 1979 42.3
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1365.1 1978 41.8
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1207.6 1372 49.1
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 0.0e+00 1197.2 2071 36.4
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 0.0e+00 1195.6 2061 36.5
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1190.3 1757 40.3
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1116.3 1248 49.6
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1095.9 1641 41.1
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 0.0e+00 1082.4 2009 35.9
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 6.8e-298 1028.5 1961 34.8
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 1.2e-265 921.4 1163 45.3
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 7.9e-254 882.1 1153 44.1
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 1.9e-247 860.9 917 51.7
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 5.0e-224 783.1 1744 31.9
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 3.0e-221 773.9 1002 43.5
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 1.6e-206 724.9 1154 39.9
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 2.7e-201 707.6 770 49.2
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 3.9e-144 517.7 699 45.1
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 7.5e-71 274.2 259 51.7
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 3.9e-67 261.9 560 31.4
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 8.1e-65 254.2 181 70.7
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 4.6e-60 238.4 167 66.5
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 7.3e-58 231.1 651 27.8
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 3.5e-52 212.2 214 46.7
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 8.7e-51 207.6 388 32.7
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 1.6e-49 203.4 270 45.2
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 8.1e-49 201.1 134 76.9
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 1.4e-48 200.3 217 45.2
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 2.4e-32 146.4 103 63.1
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 1.0e-27 131.0 214 30.8
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 4.8e-25 122.1 176 39.8
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 4.0e-24 119.0 118 56.8
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 1.4e-21 110.5 103 55.3
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 5.1e-19 102.1 82 58.5
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 1.4e-16 94.0 83 57.8
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 2.6e-15 89.7 211 29.4
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 3.8e-14 85.9 97 48.5
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 4.6e-12 79.0 62 53.2
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 3.9e-11 75.9 62 51.6


User provided reference genes

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