Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1656.0 851 100.0
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1234.9 862 70.6
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1217.6 867 69.2
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1199.9 858 68.5
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1196.4 862 67.2
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1190.3 855 67.7
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1188.3 861 71.2
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1186.4 861 66.7
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1182.5 862 68.9
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1180.2 858 68.4
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1178.7 861 68.5
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1177.9 858 68.6
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1176.4 863 68.3
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1176.4 859 70.4
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1176.0 859 67.4
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1175.6 863 69.4
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1175.6 859 67.4
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1175.2 861 67.2
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1174.8 859 66.8
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1174.1 861 70.0
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1173.7 862 69.3
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1172.5 861 66.9
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1172.5 861 66.9
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1171.8 862 69.5
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1171.4 862 69.3
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1171.0 862 69.5
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1169.1 860 66.9
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1168.7 862 69.1
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1159.8 861 68.5
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1158.3 855 66.5
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1157.5 860 65.3
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1156.7 864 66.2
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1153.3 860 68.5
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1153.3 862 66.0
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1152.9 860 67.8
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1149.8 875 68.1
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1144.0 861 65.7
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1143.6 866 66.1
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1142.5 886 66.5
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1140.9 909 65.1
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1140.6 861 66.6
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1139.0 862 65.9
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1137.5 860 67.6
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1135.6 859 65.3
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1135.2 879 64.2
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1132.9 852 64.9
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1129.4 896 63.5
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1122.5 860 66.7
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1122.5 852 66.9
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1122.1 860 67.2
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1119.4 861 65.2
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1117.4 853 67.2
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1117.4 861 63.3
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1116.3 860 65.0
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1116.3 925 61.1
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1115.9 862 64.5
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1115.9 864 64.6
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1106.7 860 63.8
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1105.5 862 63.6
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1104.0 861 66.0
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1103.6 859 63.1
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1103.2 830 67.5
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1098.2 858 63.3
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1098.2 856 64.0
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1097.8 860 66.5
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1096.3 860 66.7
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1094.3 860 66.3
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1090.9 860 62.4
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1090.1 835 65.6
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1082.0 869 63.2
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1080.5 858 63.5
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1078.9 1003 56.2
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1075.8 857 62.4
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1075.5 856 62.3
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 1.2e-310 1069.7 856 62.0
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 5.8e-310 1067.4 857 62.2
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 1.7e-309 1065.8 851 62.4
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 3.7e-309 1064.7 856 61.7
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 1.1e-308 1063.1 856 61.6
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 3.2e-308 1061.6 856 61.6
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 7.0e-308 1060.4 751 70.6
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 1.2e-307 1059.7 854 61.8
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 3.5e-307 1058.1 862 60.8
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 2.3e-306 1055.4 861 62.3
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 6.6e-306 1053.9 857 61.1
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 2.3e-303 1045.4 949 58.2
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 2.0e-302 1042.3 904 58.6
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 3.4e-302 1041.6 869 59.7
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 2.2e-301 1038.9 867 59.9
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 1.3e-298 1029.6 857 59.6
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 1.7e-293 1012.7 882 59.4
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 3.8e-277 958.4 886 57.0
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 6.0e-275 951.0 877 53.9
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 3.0e-274 948.7 939 57.3
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 5.3e-271 937.9 872 53.6
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 2.0e-270 936.0 691 67.9
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 1.2e-267 926.8 874 53.8
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 2.1e-259 899.4 749 63.0
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 4.6e-259 898.3 790 61.8
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 4.5e-246 855.1 646 66.1
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.0e-229 800.8 626 67.1
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 9.4e-228 794.3 860 46.5
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 3.8e-213 745.7 880 49.2
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 3.8e-205 719.2 969 40.9
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 3.5e-198 696.0 560 63.2
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 1.5e-188 664.1 580 60.2
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.2e-177 627.9 494 64.2
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 7.1e-167 592.0 382 72.3
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 4.3e-164 582.8 480 58.3
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 7.3e-164 582.0 481 61.3
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 9.9e-161 571.6 501 57.7
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 2.1e-158 563.9 838 40.5
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 9.0e-138 495.4 439 57.6
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 9.3e-135 485.3 328 71.6
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 5.0e-128 463.0 380 63.2
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 2.5e-119 434.1 615 42.8
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 2.4e-82 311.2 164 86.0
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.3e-80 304.7 236 60.6
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 5.2e-77 293.5 621 30.1
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 8.6e-72 276.2 404 45.0
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 6.2e-62 243.4 647 28.4
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 1.6e-46 192.2 215 50.7
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 5.1e-40 170.6 145 61.4
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 8.4e-35 153.3 560 23.8
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 1.8e-32 145.6 637 22.0
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.7e-30 137.9 94 64.9
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 5.8e-28 130.6 173 41.0
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 1.3e-27 129.4 120 52.5
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 7.1e-26 123.6 96 55.2
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.5e-20 105.9 127 42.5
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.1e-15 89.7 69 59.4
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 4.3e-15 87.8 42 88.1
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 4.2e-10 71.2 89 41.6
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 2.8e-06 58.5 28 89.3


User provided reference genes

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