Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 9.1e-110 400.6 255 100.0
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 9.7e-88 327.4 258 86.4
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.9e-83 313.2 173 95.4
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 6.8e-81 304.7 218 86.7
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 4.8e-79 298.5 220 82.7
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 4.1e-78 295.4 174 89.1
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 5.4e-78 295.0 174 88.5
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 7.0e-78 294.7 221 84.6
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 9.1e-78 294.3 177 90.4
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.6e-77 293.5 174 88.5
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 2.7e-77 292.7 254 69.7
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 2.9e-76 289.3 235 77.4
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 8.6e-76 287.7 166 89.2
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 8.6e-76 287.7 166 89.2
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 8.6e-76 287.7 166 89.2
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 4.2e-75 285.4 181 84.0
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 9.5e-75 284.3 168 88.1
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.2e-74 283.9 163 89.6
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.2e-74 283.9 163 89.6
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 1.6e-74 283.5 163 90.2
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 1.6e-74 283.5 163 90.2
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.6e-74 283.5 177 85.3
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 3.6e-74 282.3 154 94.2
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 2.3e-73 279.6 237 69.2
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 2.3e-73 279.6 233 74.7
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 3.0e-73 279.3 224 76.3
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 8.9e-73 277.7 183 78.7
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.5e-72 276.9 256 65.6
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 2.6e-72 276.2 251 66.1
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.4e-72 275.8 225 78.2
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 4.4e-72 275.4 177 84.2
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 7.5e-72 274.6 189 78.3
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 9.8e-72 274.2 260 64.2
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 9.8e-72 274.2 179 82.1
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 2.2e-71 273.1 187 75.9
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 2.2e-71 273.1 206 72.8
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 2.2e-71 273.1 254 70.1
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 2.2e-71 273.1 243 64.6
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 3.7e-71 272.3 251 65.3
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 3.7e-71 272.3 252 71.4
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 3.7e-71 272.3 188 78.2
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 8.3e-71 271.2 241 73.9
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.1e-70 270.8 187 77.5
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.1e-70 270.8 158 86.7
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.4e-70 270.4 172 84.3
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.4e-70 270.4 180 77.8
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.8e-70 270.0 165 85.5
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.8e-70 270.0 166 80.7
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 3.2e-70 269.2 166 84.3
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 4.1e-70 268.9 246 69.5
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 4.1e-70 268.9 255 63.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 5.4e-70 268.5 174 78.2
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 9.2e-70 267.7 185 77.3
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 9.2e-70 267.7 185 77.3
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 9.2e-70 267.7 166 83.1
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 9.2e-70 267.7 255 62.7
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 9.2e-70 267.7 187 76.5
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.2e-69 267.3 278 64.7
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.2e-69 267.3 170 82.4
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.6e-69 266.9 164 85.4
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.6e-69 266.9 189 76.7
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.0e-69 266.5 192 76.0
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 3.5e-69 265.8 255 62.7
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 4.5e-69 265.4 233 72.1
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 4.5e-69 265.4 192 75.0
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 4.5e-69 265.4 182 79.7
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 4.5e-69 265.4 182 79.7
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 4.5e-69 265.4 176 80.1
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 5.9e-69 265.0 163 85.3
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 5.9e-69 265.0 167 82.6
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 7.8e-69 264.6 199 73.9
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.0e-68 264.2 172 80.2
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.0e-68 264.2 167 82.0
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 1.3e-68 263.8 172 80.2
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.7e-68 263.5 152 87.5
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.7e-68 263.5 238 68.5
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 2.3e-68 263.1 152 86.8
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 2.3e-68 263.1 152 86.8
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 2.3e-68 263.1 162 84.6
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.3e-68 263.1 249 69.5
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 2.9e-68 262.7 166 83.1
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 2.9e-68 262.7 250 68.4
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.9e-68 262.7 250 68.4
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.9e-68 262.3 191 74.9
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 5.0e-68 261.9 249 69.5
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.6e-68 261.5 248 65.3
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 6.6e-68 261.5 175 78.9
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 8.6e-68 261.2 250 63.6
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.1e-67 260.8 194 74.2
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.1e-67 260.8 166 81.3
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.1e-67 260.8 173 81.5
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 2.5e-67 259.6 176 79.0
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 2.5e-67 259.6 146 91.1
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 3.3e-67 259.2 152 86.8
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 5.6e-67 258.5 185 75.1
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 9.5e-67 257.7 186 75.3
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 9.5e-67 257.7 159 85.5
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.6e-66 256.9 168 81.0
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 2.1e-66 256.5 186 75.3
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.1e-66 256.5 154 85.7
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.8e-66 256.1 231 68.8
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.8e-66 256.1 167 81.4
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 2.8e-66 256.1 167 81.4
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 6.1e-66 255.0 200 71.5
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 1.4e-65 253.8 152 84.9
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.8e-65 253.4 151 85.4
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 3.1e-65 252.7 166 80.1
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 4.0e-65 252.3 188 74.5
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.0e-65 252.3 153 85.0
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.0e-65 252.3 153 85.0
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 5.2e-65 251.9 170 78.8
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 6.8e-65 251.5 249 66.3
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.2e-64 250.8 274 63.1
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.5e-64 250.4 181 75.7
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.5e-64 250.4 177 75.1
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.5e-64 250.4 152 86.2
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.0e-64 250.0 167 78.4
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.6e-64 249.6 154 85.1
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 3.4e-64 249.2 233 64.8
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 9.8e-64 247.7 153 81.7
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.3e-63 247.3 174 76.4
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 3.7e-63 245.7 251 64.1
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.4e-62 243.8 149 84.6
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 2.4e-62 243.0 142 88.7
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 7.0e-62 241.5 145 86.2
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 4.6e-61 238.8 156 80.8
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 4.6e-61 238.8 164 78.0
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 4.3e-59 232.3 143 84.6
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 8.1e-58 228.0 176 71.0
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.8e-57 226.9 152 77.6
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 2.3e-57 226.5 131 87.8
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 3.1e-57 226.1 179 76.5
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 4.0e-57 225.7 142 85.2
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 4.0e-57 225.7 200 66.0
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 9.8e-56 221.1 225 59.1
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 8.3e-55 218.0 137 82.5
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 7.1e-54 214.9 136 85.3
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 2.1e-53 213.4 225 63.6
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 2.1e-53 213.4 225 63.6
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 8.1e-50 201.4 197 61.4
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.1e-49 201.1 121 84.3
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 4.4e-48 195.7 170 66.5
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 5.8e-48 195.3 190 61.6
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.2e-45 187.6 158 62.0
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 4.6e-45 185.7 175 59.4
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 5.1e-44 182.2 109 82.6
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 2.5e-43 179.9 152 63.2
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 4.7e-42 175.6 125 73.6
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 1.9e-38 163.7 167 59.3
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 1.9e-35 153.7 94 80.9
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 1.3e-34 151.0 94 79.8
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-33 147.9 110 72.7
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.4e-30 135.6 180 47.8
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 9.3e-30 134.8 180 47.8
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 9.3e-30 134.8 180 47.8
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.5e-29 132.9 169 49.1
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 2.1e-26 123.6 139 51.1
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.6e-21 107.5 188 45.2
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 3.0e-20 103.2 121 55.4
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 2.1e-18 97.1 53 88.7
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 4.8e-18 95.9 98 78.6
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 3.5e-13 79.7 40 95.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 7.9e-13 78.6 51 78.4
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 1.4e-06 57.8 67 53.7


User provided reference genes

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