Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G06890 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 1.3e-28 129.0 67 100.0
Carub.0006s0564 Capsella rubella HOM05D002594 ORTHO05D003499 3.3e-19 97.8 64 82.8
BcaB02g06534 Brassica carinata HOM05D002594 ORTHO05D003499 2.6e-16 88.2 71 73.2
BcaC05g25380 Brassica carinata HOM05D002594 ORTHO05D003499 2.6e-16 88.2 71 73.2
BraA08t35110Z Brassica rapa HOM05D002594 ORTHO05D003499 3.4e-16 87.8 71 73.2
BcaC07g38750 Brassica carinata HOM05D002594 ORTHO05D003499 5.8e-16 87.0 71 71.8
C08p16810 Brassica napus HOM05D002594 ORTHO05D003499 5.8e-16 87.0 71 71.8
BolC8t49302H Brassica oleracea HOM05D002594 ORTHO05D003499 5.8e-16 87.0 71 71.8
BcaB03g13089 Brassica carinata HOM05D002594 ORTHO05D003499 7.6e-16 86.7 71 71.8
BcaNung05662 Brassica carinata HOM05D002594 ORTHO05D003499 7.6e-16 86.7 71 71.8
BcaNung05664 Brassica carinata HOM05D002594 ORTHO05D003499 7.6e-16 86.7 71 71.8
A06p10690 Brassica napus HOM05D002594 ORTHO05D003499 7.6e-16 86.7 71 71.8
C05p12600 Brassica napus HOM05D002594 ORTHO05D003499 7.6e-16 86.7 71 71.8
BraA06t24251Z Brassica rapa HOM05D002594 ORTHO05D003499 7.6e-16 86.7 71 71.8
CARHR015140 Cardamine hirsuta HOM05D002594 ORTHO05D003499 7.6e-16 86.7 71 70.4
Thhalv10006856m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 7.6e-16 86.7 71 71.8
AL1G48800 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 9.9e-16 86.3 71 70.4
BcaC05g25382 Brassica carinata HOM05D002594 ORTHO05D003499 2.9e-15 84.7 71 71.8
BolC5t30004H Brassica oleracea HOM05D002594 ORTHO05D003499 2.9e-15 84.7 71 71.8
Thhalv10016290m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 8.4e-15 83.2 72 66.7
AT1G14650 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 1.4e-14 82.4 71 69.0
AL1G26610 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 2.4e-14 81.6 71 67.6
Carub.0001s1441 Capsella rubella HOM05D002594 ORTHO05D003499 3.2e-14 81.3 72 69.4
Carub.0007s2621 Capsella rubella HOM05D002594 ORTHO05D012777 3.2e-14 81.3 75 65.3
Carub.0001s1440 Capsella rubella HOM05D002594 ORTHO05D003499 5.5e-14 80.5 71 67.6
Aa31LG1G18300 Aethionema arabicum HOM05D002594 ORTHO05D003499 9.3e-14 79.7 71 64.8
BraA10t45046Z Brassica rapa HOM05D002594 ORTHO05D011495 1.0e-12 76.3 71 64.8
A10p30060 Brassica napus HOM05D002594 ORTHO05D011495 1.3e-12 75.9 70 64.3
Lj5g0011873 Lotus japonicus HOM05D002594 ORTHO05D003499 6.7e-12 73.6 75 61.3
THA.LOC104801765 Tarenaya hassleriana HOM05D002594 ORTHO05D003499 6.7e-12 73.6 76 61.8
BcaNung06484 Brassica carinata HOM05D011209 ORTHO05D011495 8.7e-12 73.2 71 62.0
ECA233G2844 Erigeron canadensis HOM05D002594 ORTHO05D003499 8.7e-12 73.2 75 61.3
C09p70470 Brassica napus HOM05D002594 ORTHO05D003499 1.1e-11 72.8 71 64.8
AL7G39900 Arabidopsis lyrata HOM05D002594 ORTHO05D012777 1.5e-11 72.4 71 59.2
Glyma.09G007700 Glycine max HOM05D002594 ORTHO05D003499 1.5e-11 72.4 75 61.3
Lj5g0018790 Lotus japonicus HOM05D002594 ORTHO05D003499 1.5e-11 72.4 75 60.0
Sc21g0005370 Simmondsia chinensis HOM05D002594 ORTHO05D003499 1.9e-11 72.0 75 60.0
SGA_v2.0_scaffold423G51465 Striga asiatica HOM05D002594 ORTHO05D003499 1.9e-11 72.0 75 61.3
AL5G17020 Arabidopsis lyrata HOM05D002594 ORTHO05D012777 3.3e-11 71.2 62 62.9
Glyma.10G264400 Glycine max HOM05D002594 ORTHO05D003499 3.3e-11 71.2 75 60.0
Glyma.20G126000 Glycine max HOM05D002594 ORTHO05D003499 3.3e-11 71.2 75 60.0
Lj2g0011534 Lotus japonicus HOM05D002594 ORTHO05D003499 3.3e-11 71.2 75 60.0
Carub.0006s0760 Capsella rubella HOM05D002594 ORTHO05D019719 4.3e-11 70.9 71 59.2
Nitab4.5_0002162g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 4.3e-11 70.9 75 58.7
Nitab4.5_0000688g0290 Nicotiana tabacum HOM05D002594 ORTHO05D003499 5.6e-11 70.5 75 58.7
TWI74G1222 Tripterygium wilfordii HOM05D002594 ORTHO05D003499 5.6e-11 70.5 75 60.0
COL.COLO4_27671 Corchorus olitorius HOM05D002594 ORTHO05D003499 7.4e-11 70.1 75 58.7
Manes.04G066600 Manihot esculenta HOM05D002594 ORTHO05D003499 7.4e-11 70.1 75 57.3
Nitab4.5_0002208g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 7.4e-11 70.1 74 59.5
Phvul.007G037600 Phaseolus vulgaris HOM05D002594 ORTHO05D003499 7.4e-11 70.1 75 58.7
MSTRG.7588 Avicennia marina HOM05D002594 ORTHO05D003499 9.6e-11 69.7 75 58.7
Cpa.g.sc1346.2 Carica papaya HOM05D002594 ORTHO05D003499 9.6e-11 69.7 76 57.9
CiPaw.05G038700 Carya illinoinensis HOM05D002594 ORTHO05D003499 9.6e-11 69.7 75 57.3
Medtr8g106170 Medicago truncatula HOM05D002594 ORTHO05D003499 9.6e-11 69.7 75 57.3
Rhsim03G0093900 Rhododendron simsii HOM05D002594 ORTHO05D003499 9.6e-11 69.7 75 60.0
TPR.G12859 Trifolium pratense HOM05D002594 ORTHO05D003499 9.6e-11 69.7 75 57.3
TPR.G26451 Trifolium pratense HOM05D002594 ORTHO05D003499 9.6e-11 69.7 75 57.3
vmacro07278 Vaccinium macrocarpon HOM05D002594 ORTHO05D003499 9.6e-11 69.7 75 58.7
GSVIVG01012058001 Vitis vinifera HOM05D002594 ORTHO05D003499 9.6e-11 69.7 75 60.0
CAN.G150.2 Capsicum annuum HOM05D002594 ORTHO05D003499 1.3e-10 69.3 75 58.7
Ca_23469_v3 Cicer arietinum L. HOM05D002594 ORTHO05D003499 1.3e-10 69.3 75 57.3
ClCG11G007770 Citrullus lanatus HOM05D002594 ORTHO05D003499 1.3e-10 69.3 75 58.7
MELO3C008151.2 Cucumis melo HOM05D002594 ORTHO05D003499 1.3e-10 69.3 75 58.7
FvH4_4g07440 Fragaria vesca HOM05D002594 ORTHO05D003499 1.3e-10 69.3 75 60.0
FAN12G4354 Fragaria x ananassa HOM05D002594 ORTHO05D003499 1.3e-10 69.3 75 60.0
Prupe.3G162200 Prunus persica HOM05D002594 ORTHO05D003499 1.3e-10 69.3 75 60.0
Sopen02g026590 Solanum pennellii HOM05D002594 ORTHO05D003499 1.3e-10 69.3 75 57.3
CSS0003265 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 1.6e-10 68.9 75 58.7
CSS0036069 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 1.6e-10 68.9 75 58.7
Ciclev10014300m.g Citrus clementina HOM05D002594 ORTHO05D003499 1.6e-10 68.9 75 57.3
HanXRQChr17g0538361 Helianthus annuus HOM05D002594 ORTHO05D003499 1.6e-10 68.9 75 56.0
Lsat_1_v5_gn_6_65541 Lactuca sativa HOM05D002594 ORTHO05D003499 1.6e-10 68.9 75 56.0
Lj3g0008201 Lotus japonicus HOM05D002594 ORTHO05D003499 1.6e-10 68.9 75 57.3
Oeu025252.1 Olea europaea HOM05D002594 ORTHO05D003499 1.6e-10 68.9 75 60.0
Prupe.1G077400 Prunus persica HOM05D002594 ORTHO05D003499 1.6e-10 68.9 75 58.7
Prupe.3G079300 Prunus persica HOM05D002594 ORTHO05D003499 1.6e-10 68.9 75 57.3
QL09p022988 Quercus lobata HOM05D002594 ORTHO05D003499 1.6e-10 68.9 75 58.7
PGSC0003DMG400002827 Solanum tuberosum HOM05D002594 ORTHO05D003499 1.6e-10 68.9 75 57.3
Actinidia05385 Actinidia chinensis HOM05D002594 ORTHO05D003499 2.1e-10 68.6 75 56.0
ECA247G2788 Erigeron canadensis HOM05D002594 ORTHO05D003499 2.1e-10 68.6 76 56.6
Glyma.15G173200 Glycine max HOM05D002594 ORTHO05D003499 2.1e-10 68.6 75 58.7
Solyc04g005690.4 Solanum lycopersicum HOM05D002594 ORTHO05D003499 2.1e-10 68.6 75 56.0
Sopen04g001740 Solanum pennellii HOM05D002594 ORTHO05D003499 2.1e-10 68.6 75 56.0
VMungo0720G1145 Vigna mungo HOM05D002594 ORTHO05D003499 2.1e-10 68.6 76 56.6
Atru.chr4.1090 Acer truncatum HOM05D002594 ORTHO05D003499 2.8e-10 68.2 75 57.3
AL6G17020 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 2.8e-10 68.2 50 70.0
Carub.0007s2532 Capsella rubella HOM05D002594 ORTHO05D012777 2.8e-10 68.2 63 58.7
CsaV3_2G033800 Cucumis sativus L. HOM05D002594 ORTHO05D003499 2.8e-10 68.2 75 58.7
FAN07G2380 Fragaria x ananassa HOM05D002594 ORTHO05D003499 2.8e-10 68.2 75 58.7
FAN17G0285 Fragaria x ananassa HOM05D002594 ORTHO05D003499 2.8e-10 68.2 75 58.7
Nn7g37178 Nelumbo nucifera HOM05D002594 ORTHO05D003499 2.8e-10 68.2 75 54.7
Peaxi162Scf00420g00339 Petunia axillaris HOM05D002594 ORTHO05D003499 2.8e-10 68.2 75 56.0
Potri.005G094600 Populus trichocarpa HOM05D002594 ORTHO05D003499 2.8e-10 68.2 75 56.0
RcHm_v2.0_Chr4g0399901 Rosa chinensis HOM05D002594 ORTHO05D003499 2.8e-10 68.2 75 58.7
Solyc02g081960.3 Solanum lycopersicum HOM05D002594 ORTHO05D003499 2.8e-10 68.2 75 57.3
Aqoxy7G03613 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 3.7e-10 67.8 75 52.0
ClCG06G002870 Citrullus lanatus HOM05D002594 ORTHO05D003499 3.7e-10 67.8 75 57.3
Medtr7g063860 Medicago truncatula HOM05D002594 ORTHO05D003499 3.7e-10 67.8 75 56.0
Actinidia27174 Actinidia chinensis HOM05D002594 ORTHO05D003499 4.8e-10 67.4 75 57.3
Haze_03325 Corylus avellana HOM05D002594 ORTHO05D003499 4.8e-10 67.4 75 56.0
FAN22G1544 Fragaria x ananassa HOM05D002594 ORTHO05D003499 4.8e-10 67.4 75 57.3
Lj1A1151T81 Lonicera japonica HOM05D002594 ORTHO05D003499 4.8e-10 67.4 75 61.3
SHI18003 Sapria himalayana HOM05D002594 ORTHO05D003499 4.8e-10 67.4 75 56.0
Duzib251G0736 Durio zibethinus HOM05D002594 ORTHO05D003499 6.2e-10 67.0 75 56.0
Migut.B01299 Erythranthe guttata HOM05D002594 ORTHO05D003499 6.2e-10 67.0 75 56.0
Gohir.A03G110200 Gossypium hirsutum HOM05D002594 ORTHO05D003499 6.2e-10 67.0 75 56.0
Gohir.D02G134800 Gossypium hirsutum HOM05D002594 ORTHO05D003499 6.2e-10 67.0 75 56.0
Gorai.005G150700 Gossypium raimondii HOM05D002594 ORTHO05D003499 6.2e-10 67.0 75 56.0
MD10G1329400 Malus domestica HOM05D002594 ORTHO05D003499 6.2e-10 67.0 75 57.3
Thecc.02G311700 Theobroma cacao HOM05D002594 ORTHO05D003499 6.2e-10 67.0 75 56.0
TAR371G1001 Trochodendron aralioides HOM05D002594 ORTHO05D003499 6.2e-10 67.0 75 52.0
Eucgr.J00854 Eucalyptus grandis HOM05D002594 ORTHO05D003499 8.2e-10 66.6 75 56.0
MBI03_g24017_MAGBIO Magnolia biondii HOM05D002594 ORTHO05D003499 8.2e-10 66.6 75 53.3
Psat7g003760 Pisum sativum HOM05D002594 ORTHO05D003499 8.2e-10 66.6 75 54.7
Psat7g089360 Pisum sativum HOM05D002594 ORTHO05D003499 8.2e-10 66.6 75 54.7
SEGI_11496 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 8.2e-10 66.6 75 49.3
A03p50220 Brassica napus HOM05D002594 ORTHO05D012777 1.1e-09 66.2 62 58.1
CAN.G809.36 Capsicum annuum HOM05D002594 ORTHO05D003499 1.1e-09 66.2 75 56.0
Cfa010375 Carpinus fangiana HOM05D002594 ORTHO05D003499 1.1e-09 66.2 75 54.7
Duzib248G1457 Durio zibethinus HOM05D002594 ORTHO05D003499 1.1e-09 66.2 75 54.7
Lalb_Chr02g0145441 Lupinus albus HOM05D002594 ORTHO05D003499 1.1e-09 66.2 75 56.0
Nitab4.5_0000646g0320 Nicotiana tabacum HOM05D002594 ORTHO05D003499 1.1e-09 66.2 63 63.5
Sed0006467 Sechium edule HOM05D002594 ORTHO05D003499 1.1e-09 66.2 75 57.3
PGSC0003DMG400007322 Solanum tuberosum HOM05D002594 ORTHO05D003499 1.1e-09 66.2 75 56.0
Aqoxy5G03555 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 1.4e-09 65.9 74 52.7
C07p48410 Brassica napus HOM05D002594 ORTHO05D012777 1.4e-09 65.9 62 59.7
MD13G1244100 Malus domestica HOM05D002594 ORTHO05D003499 1.4e-09 65.9 75 57.3
Oeu046918.1 Olea europaea HOM05D002594 ORTHO05D003499 1.4e-09 65.9 75 57.3
Peaxi162Scf00036g01621 Petunia axillaris HOM05D002594 ORTHO05D003499 1.4e-09 65.9 75 56.0
SalBow8G2582 Salvia bowleyana HOM05D002594 ORTHO05D003499 1.4e-09 65.9 75 56.0
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 1.4e-09 65.9 75 52.0
Nitab4.5_0002805g0060 Nicotiana tabacum HOM05D002594 ORTHO05D003499 2.4e-09 65.1 75 56.0
RcHm_v2.0_Chr7g0191091 Rosa chinensis HOM05D002594 ORTHO05D003499 2.4e-09 65.1 75 57.3
RcHm_v2.0_Chr7g0192451 Rosa chinensis HOM05D002594 ORTHO05D003499 2.4e-09 65.1 75 54.7
unitig_37.g12045 Utricularia gibba HOM05D002594 ORTHO05D003499 2.4e-09 65.1 75 52.0
SEGI_06729 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 3.1e-09 64.7 75 48.0
Lalb_Chr02g0145401 Lupinus albus HOM05D002594 ORTHO05D003499 4.0e-09 64.3 75 54.7
PGR044G2151 Punica granatum HOM05D002594 ORTHO05D003499 4.0e-09 64.3 75 53.3
BcaB05g25137 Brassica carinata HOM05D009193 ORTHO05D014963 5.3e-09 63.9 72 55.6
Potri.007G070700 Populus trichocarpa HOM05D002594 ORTHO05D003499 5.3e-09 63.9 75 54.7
Sabra05G0078300 Salix brachista HOM05D002594 ORTHO05D003499 5.3e-09 63.9 75 54.7
Hund24438 Selenicereus undatus HOM05D002594 ORTHO05D003499 5.3e-09 63.9 75 54.7
C07p48480 Brassica napus HOM05D027028 ORTHO05D012777 6.9e-09 63.5 62 58.1
HPP92_018927 Vanilla planifolia HOM05D002594 ORTHO05D003499 2.0e-08 62.0 75 52.0
Cc00_g35870 Coffea canephora HOM05D002594 ORTHO05D003499 2.6e-08 61.6 75 54.7
Cc09_g04890 Coffea canephora HOM05D002594 ORTHO05D003499 2.6e-08 61.6 75 54.7
FAN04G1383 Fragaria x ananassa HOM05D002594 ORTHO05D003499 2.6e-08 61.6 75 53.3
FAN13G0003 Fragaria x ananassa HOM05D002594 ORTHO05D003499 4.5e-08 60.8 75 52.0
FAN18G4310 Fragaria x ananassa HOM05D002594 ORTHO05D003499 4.5e-08 60.8 75 53.3
Ah.13g068590 Amaranthus hybridus HOM05D002594 ORTHO05D003499 5.8e-08 60.5 75 54.7
ATR0618G341 Amborella trichopoda HOM05D002594 ORTHO05D003499 5.8e-08 60.5 75 49.3
EL10Ac2g04712 Beta vulgaris HOM05D002594 ORTHO05D003499 5.8e-08 60.5 75 54.7
AUR62012173 Chenopodium quinoa HOM05D002594 ORTHO05D003499 7.6e-08 60.1 75 56.0
AUR62012853 Chenopodium quinoa HOM05D002594 ORTHO05D003499 7.6e-08 60.1 75 56.0
AUR62022810 Chenopodium quinoa HOM05D002594 ORTHO05D003499 7.6e-08 60.1 75 56.0
FAN08G0321 Fragaria x ananassa HOM05D002594 ORTHO05D003499 7.6e-08 60.1 75 52.0
RcHm_v2.0_Chr1g0364591 Rosa chinensis HOM05D002594 ORTHO05D003499 7.6e-08 60.1 73 54.8
Ah.15g095630 Amaranthus hybridus HOM05D002594 ORTHO05D003499 1.0e-07 59.7 75 56.0
CARHR081890 Cardamine hirsuta HOM05D002594 ORTHO05D003499 1.0e-07 59.7 63 49.2
Actinidia06681 Actinidia chinensis HOM05D002594 ORTHO05D003499 1.3e-07 59.3 66 59.1
BolC2t09509H Brassica oleracea HOM05D009193 ORTHO05D027634 3.8e-07 57.8 65 58.5
BcaB05g25049 Brassica carinata HOM05D009193 ORTHO05D014963 4.9e-07 57.4 74 51.4
HanXRQChr03g0079451 Helianthus annuus HOM05D002594 ORTHO05D003499 8.4e-07 56.6 66 51.5
Pp3c23_15260 Physcomitrium patens HOM05D002594 ORTHO05D003499 8.4e-07 56.6 75 50.7
SMO116G0104 Selaginella moellendorffii HOM05D002594 ORTHO05D003499 3.2e-06 54.7 75 46.7
BcaB05g25046 Brassica carinata HOM05D009193 ORTHO05D014963 9.3e-06 53.1 74 48.6
A09p52370 Brassica napus HOM05D009193 ORTHO05D014963 9.3e-06 53.1 74 50.0
BraA09t40667Z Brassica rapa HOM05D009193 ORTHO05D014963 9.3e-06 53.1 74 50.0


User provided reference genes

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