Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1680.2 849 100.0
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1627.5 896 93.0
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1611.3 849 95.2
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1583.5 849 93.8
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1552.7 849 91.6
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1531.2 849 90.8
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1529.6 849 90.7
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1528.1 849 90.7
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1528.1 849 90.9
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1525.0 849 90.7
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1519.6 849 90.6
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1515.0 849 90.3
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1486.5 859 87.4
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1373.6 860 79.0
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1232.2 866 69.6
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1231.5 861 69.7
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1225.7 861 69.5
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1225.7 861 69.5
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1225.3 864 69.8
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1225.3 859 70.3
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1223.0 864 69.7
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1213.4 859 69.7
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1211.8 860 70.1
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1208.7 861 69.3
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1208.0 866 68.9
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1207.6 860 69.3
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1207.2 858 69.5
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1206.8 860 70.0
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1206.0 860 69.9
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1205.3 864 69.7
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1203.7 861 68.8
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1199.5 861 68.6
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1195.6 878 67.8
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1194.9 863 69.5
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1192.6 869 67.7
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1192.2 864 67.7
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1189.5 893 67.1
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1180.6 861 67.8
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1180.6 860 67.6
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1179.9 859 68.1
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1177.9 860 67.6
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1177.9 863 67.7
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1174.8 860 67.7
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1172.5 863 67.2
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1171.8 863 67.0
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1171.4 830 69.2
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1169.8 861 67.1
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1168.7 864 66.3
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1168.3 865 66.5
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1167.5 860 66.9
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1166.8 866 66.1
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1165.2 859 67.3
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1164.4 863 67.7
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1162.9 864 66.1
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1160.2 861 66.2
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1152.5 860 66.2
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1151.7 850 66.7
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1150.6 861 65.9
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1147.5 864 65.5
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1144.0 862 65.8
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1143.3 860 65.7
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1142.9 860 65.7
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1142.1 866 66.4
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1139.4 886 64.3
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1134.0 865 65.0
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1134.0 864 65.3
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1130.9 930 62.4
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1125.2 863 65.0
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1123.2 857 65.6
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1122.1 856 64.5
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1121.7 851 65.1
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1119.4 856 64.5
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1115.9 879 64.1
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1115.1 866 64.5
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1112.1 857 63.7
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1110.5 856 64.8
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1110.5 866 64.2
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1108.2 838 65.2
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1101.7 851 64.4
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1099.0 1008 57.8
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1095.1 906 61.9
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1092.4 863 64.5
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1092.0 859 64.4
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1082.0 873 63.6
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 5.2e-311 1070.8 869 61.4
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 1.2e-310 1069.7 862 63.1
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 2.9e-306 1055.0 861 61.1
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 2.5e-305 1052.0 854 61.8
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 5.2e-303 1044.3 783 67.0
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 6.4e-301 1037.3 944 57.6
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 3.2e-300 1035.0 896 60.5
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 1.5e-281 973.0 887 58.3
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 7.6e-278 960.7 747 66.1
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 1.3e-277 959.9 940 55.5
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 3.1e-271 938.7 694 67.9
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 1.3e-266 923.3 792 61.1
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 5.1e-258 894.8 645 69.3
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 3.7e-256 888.6 882 51.5
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 5.8e-254 881.3 833 60.6
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 2.2e-253 879.4 870 51.5
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 5.5e-252 874.8 875 51.4
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.8e-234 816.6 621 65.5
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 1.4e-218 763.8 867 45.4
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.5e-196 689.9 494 68.6
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 6.8e-194 681.8 958 41.1
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 5.4e-191 672.2 555 61.6
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.7e-189 667.2 876 43.4
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 5.6e-180 635.6 584 57.7
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 3.9e-173 612.8 613 58.7
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 4.0e-170 602.8 486 64.4
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 4.0e-170 602.8 501 60.7
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 1.6e-163 580.9 381 73.0
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 3.2e-159 566.6 480 57.5
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 1.7e-149 534.3 445 60.7
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 4.3e-132 476.5 327 71.3
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 8.7e-125 452.2 411 58.2
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 2.5e-119 434.1 391 66.5
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 9.4e-87 325.9 215 70.2
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 2.0e-76 291.6 162 80.9
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 2.4e-66 258.1 670 28.4
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 3.2e-58 231.1 637 26.2
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 3.1e-37 161.4 523 26.2
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 1.2e-36 159.5 155 54.2
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 3.8e-35 154.5 87 83.9
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 3.2e-34 151.4 127 57.5
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 1.7e-32 145.6 129 54.3
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.9e-32 144.4 124 55.6
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 1.6e-30 139.0 97 66.0
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.2e-25 122.9 97 59.8
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 1.9e-23 115.5 671 21.3
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 1.1e-15 89.7 42 85.7
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.5e-15 89.4 84 51.2
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.2e-11 75.5 126 36.5
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 9.7e-07 60.1 49 55.1
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 9.7e-07 60.1 56 48.2


User provided reference genes

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