Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 3632.4 1859 100.0
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 3417.1 1861 93.8
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 3246.8 1860 89.4
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 3201.8 1861 88.3
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 3181.7 1864 87.2
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 3135.9 1862 86.1
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 3072.0 1856 84.6
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 3065.0 1879 84.0
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 3047.7 1856 84.5
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 3040.4 1869 83.9
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 3038.4 1857 84.7
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 3024.6 1878 83.6
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 3020.0 1856 84.4
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 3016.1 1855 84.4
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 3014.9 1855 84.3
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 3005.7 1869 83.7
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 2862.8 1853 80.8
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 2588.5 1862 71.2
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 2560.0 1652 79.5
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1958.3 1919 53.8
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1933.7 1913 53.5
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1927.9 1904 53.9
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 1924.8 1913 53.4
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1924.1 1908 53.8
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1916.7 1918 52.9
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1916.7 1902 53.0
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1916.7 1917 53.0
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1907.1 1902 52.8
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1906.3 1958 52.3
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1897.1 1901 53.8
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1894.8 1921 52.4
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1874.0 1918 52.6
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1870.9 1917 52.2
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1865.9 1912 52.4
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 1848.2 1915 52.1
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1843.2 1910 51.4
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1836.6 1909 52.4
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1827.0 1920 51.5
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1820.8 1920 51.6
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1818.5 1916 51.2
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1816.2 1908 51.4
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1813.5 1903 51.0
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1810.4 1902 51.7
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1807.0 1945 51.0
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1805.4 1912 50.6
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1794.6 1902 50.7
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1793.1 1912 50.3
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1790.4 1903 51.0
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1787.3 1949 49.6
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1787.3 1909 51.2
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1783.1 1904 50.7
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1782.3 1954 49.5
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1773.8 1903 50.3
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1772.7 1905 50.4
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1771.5 1906 50.1
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1759.6 1890 51.2
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1757.7 1915 49.5
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1753.8 1915 49.7
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1751.5 1916 50.1
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1748.4 1914 49.4
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1741.9 1922 50.4
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1722.2 2029 48.1
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1716.4 1910 48.2
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1699.5 1907 48.1
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1694.5 1913 48.8
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1691.4 1909 49.4
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1690.2 1938 48.4
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1683.7 1913 48.9
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1675.2 1886 48.6
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1667.5 1910 47.5
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1659.8 2086 45.7
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1653.6 1938 47.7
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1643.2 1900 47.2
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1629.8 1900 47.0
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1629.4 1879 48.2
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1621.3 1922 47.4
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1620.5 1902 46.7
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1620.5 1937 46.9
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1617.8 1929 46.7
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1612.0 2409 40.3
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1608.2 1854 47.1
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1606.3 1916 46.8
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1588.2 1838 48.0
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1587.0 1953 44.8
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1585.5 1761 48.0
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1580.5 1893 46.6
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1553.5 1915 47.0
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1552.7 1915 45.6
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1500.3 1963 43.8
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1498.8 1818 46.8
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1486.9 1839 45.4
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1483.8 1919 45.1
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1451.8 1817 45.0
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1408.3 1923 41.7
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1320.8 1964 40.7
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1314.3 1943 40.6
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1245.7 1564 44.9
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1239.6 1321 50.3
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1188.3 1931 37.9
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1142.5 1198 51.3
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 6.1e-296 1021.9 2057 33.4
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 9.7e-286 988.0 1097 50.1
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 1.4e-284 984.2 2047 32.4
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 4.5e-283 979.2 887 56.5
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 4.2e-257 892.9 1128 45.7
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 8.8e-255 885.2 1960 32.0
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 9.5e-249 865.1 1891 33.0
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 1.4e-228 798.1 1685 31.8
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 1.2e-224 785.0 1096 40.5
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 4.5e-198 696.8 774 50.1
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 3.3e-185 654.1 904 41.4
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 5.2e-130 470.7 694 39.6
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 4.6e-70 271.6 262 50.8
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 2.8e-67 262.3 182 73.1
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 9.3e-63 247.3 559 30.4
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 3.6e-62 245.4 166 72.3
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 2.8e-51 209.1 296 47.6
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 1.4e-50 206.8 2054 21.3
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-49 202.6 642 25.9
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 3.9e-45 188.7 529 29.7
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 2.2e-43 183.0 138 67.4
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 1.2e-38 167.2 391 30.4
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 3.5e-33 149.1 100 68.0
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 1.2e-25 124.0 207 29.5
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 3.3e-23 115.9 126 52.4
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 8.0e-22 111.3 104 58.7
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 1.8e-21 110.2 82 62.2
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 4.4e-20 105.5 95 53.7
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 2.8e-19 102.8 163 39.3
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 1.3e-16 94.0 113 49.6
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 1.4e-13 84.0 196 31.1
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 1.8e-10 73.6 60 50.0
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 9.2e-10 71.2 127 35.4
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 1.6e-09 70.5 60 48.3
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 2.3e-08 66.6 66 47.0
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 1.9e-07 63.5 216 25.0


User provided reference genes

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