Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G39430 Arabidopsis lyrata HOM05D004747 ORTHO05D006051 1.9e-25 118.2 54 100.0
AL5G30830 Arabidopsis lyrata HOM05D004747 ORTHO05D006051 6.1e-16 86.7 53 83.0
AT3G50670 Arabidopsis thaliana HOM05D004747 ORTHO05D006051 6.1e-16 86.7 53 83.0
CDE04G0203 Ceratophyllum demersum HOM05D004747 ORTHO05D006051 1.0e-15 85.9 51 84.3
Carub.0005s1700 Capsella rubella HOM05D004747 ORTHO05D006051 1.8e-15 85.1 53 81.1
Thhalv10010375m.g Eutrema salsugineum HOM05D004747 ORTHO05D006051 3.0e-15 84.3 53 81.1
TAR628G1004 Trochodendron aralioides HOM05D004747 ORTHO05D006051 3.0e-15 84.3 51 82.4
Cc07_g09390 Coffea canephora HOM05D004747 ORTHO05D006051 4.0e-15 84.0 52 80.8
Dinv39972 Davidia involucrata HOM05D004747 ORTHO05D006051 4.0e-15 84.0 53 81.1
Sp5g11550 Schrenkiella parvula HOM05D004747 ORTHO05D006051 4.0e-15 84.0 53 81.1
ATR0733G064 Amborella trichopoda HOM05D004747 ORTHO05D006051 5.2e-15 83.6 51 82.4
CDE03G0295 Ceratophyllum demersum HOM05D004747 ORTHO05D006051 5.2e-15 83.6 51 82.4
TWI09G1640 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 5.2e-15 83.6 51 82.4
COL.COLO4_22095 Corchorus olitorius HOM05D004747 ORTHO05D006051 6.8e-15 83.2 52 80.8
TWI73G1158 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 6.8e-15 83.2 51 80.4
HanXRQChr07g0192831 Helianthus annuus HOM05D004747 ORTHO05D006051 8.9e-15 82.8 51 82.4
Sed0017755 Sechium edule HOM05D004747 ORTHO05D006051 8.9e-15 82.8 51 80.4
CAN.G358.106 Capsicum annuum HOM05D004747 ORTHO05D006051 1.2e-14 82.4 51 80.4
Dinv26824 Davidia involucrata HOM05D004747 ORTHO05D006051 1.2e-14 82.4 51 80.4
Peaxi162Scf00515g00430 Petunia axillaris HOM05D004747 ORTHO05D006051 1.2e-14 82.4 51 80.4
Solyc02g085420.4 Solanum lycopersicum HOM05D004747 ORTHO05D006051 1.2e-14 82.4 51 80.4
Sopen02g030100 Solanum pennellii HOM05D004747 ORTHO05D006051 1.2e-14 82.4 51 80.4
PGSC0003DMG400014893 Solanum tuberosum HOM05D004747 ORTHO05D006051 1.2e-14 82.4 51 80.4
ECA238G3955 Erigeron canadensis HOM05D004747 ORTHO05D006051 1.5e-14 82.0 51 82.4
Atru.chr3.560 Acer truncatum HOM05D004747 ORTHO05D006051 2.0e-14 81.6 51 80.4
CiPaw.02G016400 Carya illinoinensis HOM05D004747 ORTHO05D006051 2.0e-14 81.6 52 78.8
MBI16_g37699_MAGBIO Magnolia biondii HOM05D004747 ORTHO05D006051 2.0e-14 81.6 51 82.4
arahy.Tifrunner.gnm1.ann1.0AQ0IW Arachis hypogaea HOM05D004747 ORTHO05D006051 2.6e-14 81.3 51 80.4
Migut.H01001 Erythranthe guttata HOM05D004747 ORTHO05D006051 2.6e-14 81.3 51 78.4
Lj4g0010267 Lotus japonicus HOM05D004747 ORTHO05D006051 2.6e-14 81.3 52 78.8
Nn1g05031 Nelumbo nucifera HOM05D004747 ORTHO05D006051 2.6e-14 81.3 51 80.4
Sc07g0000250 Simmondsia chinensis HOM05D004747 ORTHO05D006051 2.6e-14 81.3 51 80.4
Thecc.01G037400 Theobroma cacao HOM05D004747 ORTHO05D006051 2.6e-14 81.3 52 78.8
HPP92_014469 Vanilla planifolia HOM05D004747 ORTHO05D006051 2.6e-14 81.3 51 80.4
Lsat_1_v5_gn_2_76601 Lactuca sativa HOM05D004747 ORTHO05D006051 3.4e-14 80.9 51 80.4
Lalb_Chr05g0212861 Lupinus albus HOM05D004747 ORTHO05D006051 3.4e-14 80.9 51 78.4
Lalb_Chr05g0227631 Lupinus albus HOM05D004747 ORTHO05D006051 3.4e-14 80.9 52 76.9
Nitab4.5_0000434g0070 Nicotiana tabacum HOM05D004747 ORTHO05D006051 3.4e-14 80.9 51 78.4
Duzib264G0087 Durio zibethinus HOM05D004747 ORTHO05D006051 4.4e-14 80.5 52 76.9
Cfa004298 Carpinus fangiana HOM05D000682 ORTHO05D000510 5.7e-14 80.1 51 78.4
Haze_15104 Corylus avellana HOM05D004747 ORTHO05D006051 5.7e-14 80.1 51 78.4
FAN23G0552 Fragaria x ananassa HOM05D004747 ORTHO05D006051 5.7e-14 80.1 53 75.5
FAN23G0698 Fragaria x ananassa HOM05D004747 ORTHO05D006051 5.7e-14 80.1 53 75.5
Glyma.01G175100 Glycine max HOM05D004747 ORTHO05D006051 5.7e-14 80.1 51 78.4
Phvul.002G029300 Phaseolus vulgaris HOM05D004747 ORTHO05D006051 5.7e-14 80.1 51 78.4
QL06p045737 Quercus lobata HOM05D004747 ORTHO05D006051 5.7e-14 80.1 52 76.9
TPR.G34973 Trifolium pratense HOM05D004747 ORTHO05D006051 5.7e-14 80.1 51 78.4
VMungo1215G2053 Vigna mungo HOM05D004747 ORTHO05D006051 5.7e-14 80.1 51 78.4
Cpa.g.sc337.7 Carica papaya HOM05D004747 ORTHO05D006051 7.5e-14 79.7 51 78.4
Ca_22260_v3 Cicer arietinum L. HOM05D004747 ORTHO05D006051 7.5e-14 79.7 51 78.4
Glyma.11G067300 Glycine max HOM05D004747 ORTHO05D006051 7.5e-14 79.7 51 78.4
Gohir.A10G095200 Gossypium hirsutum HOM05D004747 ORTHO05D006051 7.5e-14 79.7 51 78.4
Gohir.D10G092700 Gossypium hirsutum HOM05D004747 ORTHO05D006051 7.5e-14 79.7 51 78.4
Gorai.011G101900 Gossypium raimondii HOM05D004747 ORTHO05D006051 7.5e-14 79.7 51 78.4
Medtr8g077840 Medicago truncatula HOM05D004747 ORTHO05D006051 7.5e-14 79.7 51 78.4
Potri.007G026900 Populus trichocarpa HOM05D004747 ORTHO05D006051 7.5e-14 79.7 51 78.4
PGR102G2748 Punica granatum HOM05D004747 ORTHO05D006051 7.5e-14 79.7 51 78.4
Rhsim08G0114500 Rhododendron simsii HOM05D004747 ORTHO05D006051 7.5e-14 79.7 51 78.4
Sabra07G0023600 Salix brachista HOM05D004747 ORTHO05D006051 7.5e-14 79.7 51 78.4
TAR376G1008 Trochodendron aralioides HOM05D004747 ORTHO05D006051 7.5e-14 79.7 51 78.4
MELO3C007821.2 Cucumis melo HOM05D004747 ORTHO05D006051 9.8e-14 79.3 51 78.4
CsaV3_6G046180 Cucumis sativus L. HOM05D004747 ORTHO05D006051 9.8e-14 79.3 51 78.4
DCAR_025922 Daucus carota HOM05D004747 ORTHO05D006051 9.8e-14 79.3 52 76.9
FvH4_1g13450 Fragaria vesca HOM05D004747 ORTHO05D006051 9.8e-14 79.3 51 76.5
FAN19G0426 Fragaria x ananassa HOM05D004747 ORTHO05D006051 9.8e-14 79.3 51 76.5
FAN28G1132 Fragaria x ananassa HOM05D004747 ORTHO05D006051 9.8e-14 79.3 51 76.5
HanXRQChr14g0441201 Helianthus annuus HOM05D004747 ORTHO05D006051 9.8e-14 79.3 51 78.4
Manes.02G092600 Manihot esculenta HOM05D004747 ORTHO05D006051 9.8e-14 79.3 51 78.4
PSO731G0026 Papaver somniferum HOM05D004747 ORTHO05D006051 9.8e-14 79.3 51 78.4
PSO764G0172 Papaver somniferum HOM05D004747 ORTHO05D006051 9.8e-14 79.3 51 78.4
RcHm_v2.0_Chr2g0101831 Rosa chinensis HOM05D004747 ORTHO05D006051 9.8e-14 79.3 51 76.5
arahy.Tifrunner.gnm1.ann1.Q9RGLK Arachis hypogaea HOM05D004747 ORTHO05D006051 1.3e-13 79.0 51 78.4
BcaB02g09994 Brassica carinata HOM05D000104 ORTHO05D006241 1.3e-13 79.0 53 75.5
CSS0024014 Camellia sinensis var. sinensis HOM05D004747 ORTHO05D006051 1.3e-13 79.0 51 76.5
Thhalv10004249m.g Eutrema salsugineum HOM05D004747 ORTHO05D006051 1.3e-13 79.0 53 75.5
Sp2g29940 Schrenkiella parvula HOM05D004747 ORTHO05D006051 1.3e-13 79.0 53 75.5
arahy.Tifrunner.gnm1.ann1.SH2RA2 Arachis hypogaea HOM05D004747 ORTHO05D006051 1.7e-13 78.6 51 78.4
Cfa004294 Carpinus fangiana HOM05D007518 ORTHO05D008168 1.7e-13 78.6 51 76.5
Ciclev10025502m.g Citrus clementina HOM05D004747 ORTHO05D006051 1.7e-13 78.6 51 78.4
Eucgr.H01267 Eucalyptus grandis HOM05D004747 ORTHO05D006051 1.7e-13 78.6 51 76.5
Nitab4.5_0004711g0020 Nicotiana tabacum HOM05D004747 ORTHO05D006051 1.7e-13 78.6 51 76.5
Psat4g092040 Pisum sativum HOM05D004747 ORTHO05D006051 1.7e-13 78.6 51 76.5
GSVIVG01018981001 Vitis vinifera HOM05D004747 ORTHO05D006051 1.7e-13 78.6 51 76.5
Lalb_Chr09g0333571 Lupinus albus HOM05D004747 ORTHO05D006051 2.2e-13 78.2 51 74.5
Potri.005G124300 Populus trichocarpa HOM05D004747 ORTHO05D006051 2.2e-13 78.2 51 78.4
Sabra05G0102100 Salix brachista HOM05D004747 ORTHO05D006051 2.2e-13 78.2 51 78.4
SGA_v2.0_scaffold276G46638 Striga asiatica HOM05D004747 ORTHO05D006051 2.2e-13 78.2 51 78.4
unitig_21.g20956 Utricularia gibba HOM05D004747 ORTHO05D006051 2.2e-13 78.2 51 78.4
BcaB04g20104 Brassica carinata HOM05D000104 ORTHO05D006241 2.8e-13 77.8 53 75.5
BcaC04g23156 Brassica carinata HOM05D004747 ORTHO05D006051 2.8e-13 77.8 53 75.5
C09p11600 Brassica napus HOM05D000104 ORTHO05D006241 2.8e-13 77.8 53 75.5
BolC9t54053H Brassica oleracea HOM05D004747 ORTHO05D006051 2.8e-13 77.8 53 75.5
CANSAT01G3054 Cannabis sativa HOM05D004747 ORTHO05D006051 2.8e-13 77.8 51 76.5
ClCG01G019460 Citrullus lanatus HOM05D004747 ORTHO05D006051 2.8e-13 77.8 51 76.5
Lj4A199T81 Lonicera japonica HOM05D004747 ORTHO05D006051 2.8e-13 77.8 51 76.5
Oeu007440.1 Olea europaea HOM05D004747 ORTHO05D006051 2.8e-13 77.8 51 78.4
Sed0005805 Sechium edule HOM05D004747 ORTHO05D006051 2.8e-13 77.8 51 76.5
A09p09800 Brassica napus HOM05D000104 ORTHO05D006241 3.7e-13 77.4 53 75.5
BraA09t36627Z Brassica rapa HOM05D000104 ORTHO05D006241 3.7e-13 77.4 53 75.5
Pp3c7_6390 Physcomitrium patens HOM05D004747 ORTHO05D006051 3.7e-13 77.4 51 74.5
Prupe.7G153200 Prunus persica HOM05D004747 ORTHO05D006051 3.7e-13 77.4 51 74.5
Manes.01G134400 Manihot esculenta HOM05D004747 ORTHO05D006051 4.9e-13 77.0 51 76.5
EL10Ac6g14938 Beta vulgaris HOM05D004747 ORTHO05D006051 6.3e-13 76.6 51 76.5
CiPaw.01G036600 Carya illinoinensis HOM05D004747 ORTHO05D006051 6.3e-13 76.6 51 76.5
AUR62003163 Chenopodium quinoa HOM05D004747 ORTHO05D006051 6.3e-13 76.6 51 76.5
AUR62007983 Chenopodium quinoa HOM05D004747 ORTHO05D006051 6.3e-13 76.6 51 76.5
Sc16g0000910 Simmondsia chinensis HOM05D004747 ORTHO05D006051 6.3e-13 76.6 51 76.5
TWI53G0963 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 6.3e-13 76.6 51 76.5
Actinidia19177 Actinidia chinensis HOM05D004747 ORTHO05D006051 8.3e-13 76.3 51 76.5
MD02G1149800 Malus domestica HOM05D004747 ORTHO05D006051 8.3e-13 76.3 51 72.5
Mapoly0005s0256 Marchantia polymorpha HOM05D004747 ORTHO05D006051 8.3e-13 76.3 51 74.5
Duzib187G1223 Durio zibethinus HOM05D004747 ORTHO05D006051 1.1e-12 75.9 52 76.9
Pp3c11_26490 Physcomitrium patens HOM05D004747 ORTHO05D006051 1.1e-12 75.9 51 72.5
Hund14148 Selenicereus undatus HOM05D004747 ORTHO05D006051 1.1e-12 75.9 50 78.0
FAN26G3322 Fragaria x ananassa HOM05D004747 ORTHO05D006051 1.4e-12 75.5 51 74.5
Aa31LG1G15300 Aethionema arabicum HOM05D004747 ORTHO05D006051 1.8e-12 75.1 53 73.6
vmacro17845 Vaccinium macrocarpon HOM05D004747 ORTHO05D006051 1.8e-12 75.1 53 71.7
Aqoxy5G01657 Aquilegia oxysepala HOM05D004747 ORTHO05D006051 2.4e-12 74.7 51 76.5
SMO196G0248 Selaginella moellendorffii HOM05D004747 ORTHO05D006051 2.4e-12 74.7 51 72.5
vmacro12724 Vaccinium macrocarpon HOM05D004747 ORTHO05D006051 3.2e-12 74.3 51 74.5
A07p17190 Brassica napus HOM05D004747 ORTHO05D006051 4.1e-12 73.9 53 71.7
Os10g0115600 Oryza sativa ssp. japonica HOM05D004747 ORTHO05D006051 7.0e-12 73.2 53 71.7
PSO541G4083 Papaver somniferum HOM05D004747 ORTHO05D006051 7.0e-12 73.2 51 74.5
PSO675G8944 Papaver somniferum HOM05D004747 ORTHO05D006051 7.0e-12 73.2 51 74.5
CARHR280960 Cardamine hirsuta HOM05D004747 ORTHO05D006051 9.2e-12 72.8 53 71.7
MD15G1264400 Malus domestica HOM05D004747 ORTHO05D006051 1.2e-11 72.4 51 70.6
Zm00001eb224440 Zea mays HOM05D004747 ORTHO05D006051 1.2e-11 72.4 53 73.6
Ah.02g126430 Amaranthus hybridus HOM05D004747 ORTHO05D006051 5.9e-11 70.1 52 73.1
DCAR_017262 Daucus carota HOM05D004747 ORTHO05D006051 5.9e-11 70.1 51 66.7
Oeu054757.1 Olea europaea HOM05D004747 ORTHO05D006051 7.8e-11 69.7 51 74.5
CBR_g28042 Chara braunii HOM05D004747 ORTHO05D006051 2.9e-10 67.8 52 69.2
Lsat_1_v5_gn_2_39760 Lactuca sativa HOM05D004747 ORTHO05D006051 5.0e-10 67.0 42 76.2
arahy.Tifrunner.gnm1.ann1.SYJW5F Arachis hypogaea HOM05D004747 ORTHO05D006051 6.6e-10 66.6 51 68.6
Lsat_1_v5_gn_6_52801 Lactuca sativa HOM05D004747 ORTHO05D006051 8.6e-10 66.2 42 76.2
SGA_v2.0_scaffold33G13369 Striga asiatica HOM05D004747 ORTHO05D006051 1.2e-08 62.4 42 73.8
TWI39G0421 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 1.4e-07 58.9 38 76.3


User provided reference genes

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