Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 1.2e-211 739.6 371 100.0
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 5.4e-204 714.1 371 95.4
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 3.9e-202 708.0 371 94.9
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 1.1e-196 689.9 372 92.7
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 4.1e-188 661.4 371 90.6
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 4.6e-187 657.9 371 89.2
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 1.2e-184 649.8 371 88.1
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 1.2e-184 649.8 371 88.1
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 2.8e-184 648.7 371 88.1
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 6.2e-184 647.5 371 87.9
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 6.2e-184 647.5 371 87.9
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 1.4e-183 646.4 371 87.9
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 1.8e-183 646.0 371 88.7
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 1.8e-183 646.0 371 87.6
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 3.4e-182 641.7 371 87.6
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.9e-172 609.4 385 81.8
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 5.3e-159 564.7 378 75.7
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 3.4e-158 562.0 371 76.3
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.8e-154 549.7 371 73.9
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 3.3e-153 545.4 375 73.9
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 7.4e-153 544.3 371 73.3
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 1.3e-152 543.5 375 73.1
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 4.8e-152 541.6 371 74.1
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 3.1e-151 538.9 378 73.0
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 4.1e-151 538.5 374 73.0
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 6.9e-151 537.7 379 71.8
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.2e-150 537.0 371 72.5
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 1.5e-150 536.6 372 71.2
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.5e-150 536.6 373 73.2
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 1.5e-150 536.6 371 72.0
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 2.0e-150 536.2 371 72.5
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 4.5e-150 535.0 372 74.2
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 5.9e-150 534.6 371 72.2
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 7.6e-150 534.3 372 71.0
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 1.0e-149 533.9 379 72.8
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 1.0e-149 533.9 371 71.4
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 1.7e-149 533.1 375 72.0
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 3.8e-149 531.9 381 71.4
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 5.0e-149 531.6 383 70.5
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 1.1e-148 530.4 372 71.5
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 1.1e-148 530.4 371 71.2
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 5.5e-148 528.1 371 71.7
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 5.5e-148 528.1 385 69.6
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 7.2e-148 527.7 371 71.2
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 9.3e-148 527.3 372 71.5
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 1.2e-147 526.9 371 70.9
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 4.6e-147 525.0 385 69.4
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 6.1e-147 524.6 371 70.6
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 7.9e-147 524.2 371 70.1
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 7.9e-147 524.2 379 68.6
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 1.5e-145 520.0 371 70.6
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 1.5e-145 520.0 373 72.1
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 7.4e-145 517.7 371 71.7
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.3e-144 516.9 385 68.8
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 6.3e-144 514.6 383 67.4
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.1e-143 513.8 367 70.6
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.8e-143 513.1 372 70.4
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 2.4e-143 512.7 382 67.0
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 4.1e-143 511.9 372 69.9
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 4.1e-143 511.9 371 67.9
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 4.1e-143 511.9 383 66.8
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 5.3e-143 511.5 372 69.9
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 1.5e-142 510.0 372 70.7
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 4.5e-142 508.4 383 67.9
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 7.7e-142 507.7 371 68.2
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 1.0e-141 507.3 371 70.1
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 1.7e-141 506.5 372 68.8
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 2.2e-141 506.1 371 68.2
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 3.8e-141 505.4 383 66.1
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 8.5e-141 504.2 371 68.7
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 1.9e-140 503.1 386 65.8
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 1.2e-139 500.4 375 68.3
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 7.9e-139 497.7 376 66.8
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 7.9e-139 497.7 386 65.5
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 3.9e-138 495.4 372 66.9
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 1.5e-137 493.4 369 66.9
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.0e-137 493.0 379 66.5
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 7.4e-137 491.1 369 66.4
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 2.8e-136 489.2 402 64.2
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 4.8e-136 488.4 371 67.4
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.8e-136 488.4 381 66.1
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 1.8e-135 486.5 361 67.0
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 5.9e-134 481.5 373 65.7
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 1.7e-133 479.9 371 67.4
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 2.2e-133 479.6 372 66.1
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 4.2e-132 475.3 372 65.6
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 1.8e-130 469.9 373 63.0
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 3.0e-130 469.2 372 64.0
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 3.0e-130 469.2 373 64.1
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 6.7e-130 468.0 372 64.2
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 3.3e-129 465.7 372 63.7
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 5.7e-129 464.9 372 63.4
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 9.7e-129 464.2 372 63.7
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 1.3e-128 463.8 372 61.8
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 1.7e-128 463.4 373 61.9
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.7e-128 463.4 372 63.4
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 2.4e-127 459.5 372 63.2
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 3.1e-127 459.1 372 62.6
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 7.0e-127 458.0 374 62.6
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 9.1e-127 457.6 367 63.2
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 9.1e-127 457.6 372 62.6
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 3.5e-126 455.7 319 73.0
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 5.9e-126 454.9 324 71.0
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 1.3e-125 453.8 372 62.1
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 2.9e-125 452.6 373 61.9
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 9.4e-124 447.6 371 61.2
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 1.1e-121 440.7 374 64.2
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 1.5e-121 440.3 371 61.2
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 2.6e-121 439.5 372 61.3
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 4.4e-121 438.7 379 59.6
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 4.8e-120 435.3 345 63.5
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 5.5e-116 421.8 359 62.7
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 3.4e-113 412.5 386 53.6
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 7.5e-113 411.4 364 59.3
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 1.7e-112 410.2 309 69.6
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 4.5e-110 402.1 325 66.8
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.7e-109 400.2 324 63.9
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 3.6e-107 392.5 369 56.1
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 2.0e-102 376.7 375 55.5
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 5.6e-100 368.6 369 52.6
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 2.7e-94 349.7 314 56.7
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 4.6e-94 349.0 283 64.3
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 5.6e-92 342.0 303 58.1
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 6.2e-83 312.0 189 83.6
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.0e-69 268.1 150 86.7
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 1.1e-68 264.6 276 49.6
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 2.1e-67 260.4 161 78.9
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 1.1e-66 258.1 381 40.4
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 6.4e-64 248.8 258 54.7
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 2.4e-58 230.3 327 44.3
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 3.1e-58 229.9 160 73.8
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 4.5e-57 226.1 331 38.1
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.2e-54 218.0 164 68.9
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 1.6e-54 217.6 213 53.5
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 3.3e-52 209.9 181 56.9
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.6e-49 200.3 167 63.5
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 9.3e-47 191.8 167 61.7
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 8.1e-43 178.7 124 73.4
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 2.6e-41 173.7 133 71.4
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 4.5e-41 172.9 228 42.1
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 5.8e-41 172.6 133 70.7
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.2e-30 138.3 104 63.5
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 6.1e-30 136.0 81 82.7
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.0e-29 135.2 121 60.3
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 1.8e-29 134.4 106 67.9
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 1.0e-24 118.6 178 41.6
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 3.6e-22 110.2 84 65.5
A07p02870 Brassica napus HOM05D012141 ORTHO05D013118 5.9e-17 92.8 63 74.6
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.4e-15 88.2 51 84.3
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.4e-15 88.2 51 84.3


User provided reference genes

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